Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 3.3e-281 971.1 500 100.0
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.7e-267 924.9 505 95.2
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.4e-231 805.4 516 83.1
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.2e-211 740.0 492 82.5
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.4e-200 701.0 495 76.0
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.4e-175 620.2 449 75.9
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 6.6e-165 584.7 468 70.5
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 2.7e-150 536.2 530 57.9
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 2.5e-148 529.6 518 56.8
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.6e-142 510.4 511 54.8
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.0e-141 507.7 508 56.9
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 8.2e-139 498.0 509 55.4
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.1e-138 497.7 515 54.6
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.8e-138 496.9 518 55.6
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 3.1e-138 496.1 485 58.8
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 5.3e-138 495.4 529 54.1
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 4.5e-137 492.3 465 58.7
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.3e-136 490.7 504 55.4
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.3e-136 490.7 507 53.8
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.1e-135 487.6 506 54.0
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 3.2e-135 486.1 536 52.2
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 3.2e-135 486.1 517 55.3
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 4.2e-135 485.7 523 53.9
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.1e-134 483.4 481 55.5
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 3.6e-134 482.6 506 54.3
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.0e-133 481.1 509 54.2
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 3.9e-133 479.2 482 56.4
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 5.1e-133 478.8 519 52.6
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.5e-132 477.2 515 53.0
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 2.5e-132 476.5 515 50.1
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 8.2e-131 471.5 488 52.7
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 1.4e-130 470.7 515 51.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.4e-130 470.7 513 52.8
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 7.7e-129 464.9 524 51.1
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.9e-128 463.0 457 56.7
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 5.0e-128 462.2 491 50.9
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 5.0e-128 462.2 495 52.7
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 8.5e-128 461.5 530 51.1
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.1e-127 461.1 539 51.0
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.9e-127 460.3 529 50.9
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 3.2e-127 459.5 499 52.5
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 4.2e-127 459.1 453 55.4
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.6e-126 457.2 455 55.8
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.1e-126 456.8 497 52.9
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 2.7e-126 456.4 459 58.6
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 4.7e-126 455.7 511 50.7
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 6.1e-126 455.3 497 53.1
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.0e-125 454.5 403 59.8
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.4e-125 454.1 561 50.1
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.0e-125 453.0 500 53.4
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 5.1e-125 452.2 511 50.1
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.6e-124 449.9 518 50.8
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 4.4e-124 449.1 510 52.7
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 3.7e-123 446.0 508 53.3
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 3.7e-123 446.0 491 53.6
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 6.3e-123 445.3 528 50.2
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.2e-121 441.0 471 53.3
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 3.5e-121 439.5 505 51.3
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.9e-119 433.7 470 52.1
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 4.2e-119 432.6 504 50.6
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 4.7e-118 429.1 339 66.1
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 2.6e-116 423.3 546 47.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 4.8e-115 419.1 567 46.6
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.1e-114 417.9 538 47.8
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 3.5e-113 412.9 509 49.1
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 1.3e-112 411.0 465 51.0
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.9e-111 407.1 437 52.4
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.5e-111 406.8 397 54.7
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 5.5e-111 405.6 464 52.2
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 5.5e-111 405.6 366 59.6
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.7e-110 403.3 547 45.2
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 4.7e-110 402.5 471 49.5
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 8.0e-110 401.7 343 62.1
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 8.0e-110 401.7 497 48.5
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.4e-109 401.0 465 49.2
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 1.4e-109 401.0 467 50.7
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.3e-109 400.2 358 58.7
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.0e-109 399.8 356 59.8
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.2e-109 399.1 447 50.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 2.7e-105 386.7 467 50.5
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 3.5e-105 386.3 468 46.8
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.3e-104 384.4 492 48.6
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 2.2e-104 383.6 372 53.5
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 1.2e-102 377.9 456 50.9
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 2.8e-99 366.7 516 44.0
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.8e-99 366.7 459 46.8
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 1.4e-98 364.4 549 42.4
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.6e-96 355.5 304 65.8
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 7.2e-95 352.1 344 53.5
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 3.2e-90 336.7 424 50.0
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 7.3e-87 325.5 346 56.1
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.0e-85 321.6 422 47.9
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.3e-83 314.7 293 61.8
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.6e-81 307.8 430 45.6
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 9.5e-79 298.5 323 52.9
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 4.7e-78 296.2 185 75.7
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.9e-77 292.0 222 66.7
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 2.9e-75 287.0 387 42.6
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 3.7e-75 286.6 302 54.6
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.3e-75 285.4 304 57.2
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.3e-72 278.1 348 49.1
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.7e-72 277.7 396 41.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.3e-72 277.3 313 50.2
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.0e-72 276.9 334 49.7
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 9.9e-68 261.9 201 67.7
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 4.3e-63 246.5 251 57.4
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.5e-60 238.0 167 72.5
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 9.9e-60 235.3 456 33.6
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 6.4e-59 232.6 284 45.4
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.5e-57 226.9 284 44.7
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 4.6e-57 226.5 185 61.6
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.6e-57 226.5 167 69.5
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 7.8e-57 225.7 166 70.5
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 3.0e-56 223.8 283 44.9
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 6.6e-56 222.6 154 73.4
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-55 221.5 327 40.7
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.9e-55 221.1 281 44.5
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.6e-54 218.0 146 71.2
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 6.4e-51 206.1 295 41.0
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 3.5e-49 200.3 263 47.5
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.9e-47 194.5 319 38.2
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.3e-47 193.4 296 39.5
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 7.3e-47 192.6 319 38.2
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 7.3e-47 192.6 293 39.6
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 1.6e-46 191.4 205 55.6
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 8.1e-46 189.1 286 40.2
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 4.5e-44 183.3 162 57.4
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 9.9e-44 182.2 184 50.5
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.5e-39 168.3 121 66.1
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 3.3e-39 167.2 180 47.8
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.6e-33 148.3 185 45.9
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.6e-33 146.7 115 69.6
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.5e-31 141.7 177 50.8
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 7.4e-31 139.4 272 33.8
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 9.6e-31 139.0 139 55.4
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.6e-30 138.3 299 31.4
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 2.0e-28 131.3 407 26.5
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.3e-27 128.6 104 65.4
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.6e-25 121.7 196 39.8
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.1e-18 99.0 177 32.8
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 5.5e-18 96.7 97 47.4
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-17 95.5 86 51.2
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 2.1e-17 94.7 94 48.9
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 3.6e-17 94.0 51 76.5
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 1.0e-16 92.4 290 31.7
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.1e-16 90.1 63 65.1
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 1.3e-14 85.5 140 40.0
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.7e-14 85.1 67 58.2
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.3e-14 83.2 139 39.6
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 5.0e-11 73.6 119 37.8
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 1.9e-10 71.6 95 45.3
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.2e-09 68.9 38 81.6
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 1.5e-07 62.0 41 75.6
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 1.5e-07 62.0 35 80.0


User provided reference genes

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