Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 0.0e+00 1328.5 681 100.0
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 0.0e+00 1317.4 684 99.1
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 0.0e+00 1295.0 684 97.2
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 0.0e+00 1189.1 683 87.8
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 0.0e+00 1186.8 681 87.2
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 0.0e+00 1182.9 682 87.4
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 2.7e-302 1041.6 689 76.5
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 2.1e-299 1031.9 685 76.1
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 4.2e-295 1017.7 690 75.5
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 2.8e-291 1005.0 694 73.3
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 6.9e-290 1000.3 689 74.6
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 1.5e-289 999.2 559 89.8
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.3e-288 996.1 690 73.2
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 9.3e-287 989.9 686 74.3
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 1.6e-286 989.2 690 73.9
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 4.6e-286 987.6 686 73.0
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 7.9e-286 986.9 687 73.9
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 1.8e-285 985.7 682 73.2
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 1.8e-285 985.7 636 76.3
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 6.7e-285 983.8 689 73.1
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 1.5e-284 982.6 688 73.7
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 9.0e-282 973.4 694 72.6
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 1.3e-280 969.5 686 72.7
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 2.2e-280 968.8 668 72.2
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 2.9e-280 968.4 625 75.7
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 5.0e-280 967.6 684 72.4
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 6.5e-280 967.2 684 71.2
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 6.5e-280 967.2 681 72.5
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 1.9e-279 965.7 693 72.4
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 4.2e-279 964.5 713 70.5
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 3.6e-278 961.4 684 71.5
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 4.6e-278 961.1 641 75.4
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 3.0e-277 958.4 689 69.4
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 3.0e-277 958.4 688 72.7
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 1.1e-276 956.4 685 71.7
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 4.3e-276 954.5 686 70.7
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 1.3e-275 953.0 687 70.5
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 2.2e-275 952.2 688 70.8
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 2.8e-275 951.8 687 71.8
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 8.2e-275 950.3 686 71.7
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 8.2e-275 950.3 683 70.9
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 4.1e-274 948.0 684 70.2
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 6.9e-274 947.2 682 70.1
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 1.2e-273 946.4 676 71.6
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 1.0e-272 943.3 698 69.9
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 1.1e-271 939.9 678 71.1
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 1.9e-271 939.1 682 69.9
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 2.5e-271 938.7 668 68.7
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 5.5e-271 937.6 688 70.1
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.2e-270 936.4 674 70.2
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 1.2e-270 936.4 703 70.3
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.6e-270 936.0 682 69.8
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 4.7e-270 934.5 682 69.6
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 5.1e-269 931.0 681 70.8
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 6.7e-269 930.6 674 69.7
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 5.7e-268 927.5 694 68.7
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 1.7e-267 926.0 691 70.3
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.4e-266 922.9 674 68.8
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 7.0e-266 920.6 683 68.7
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 1.5e-265 919.5 687 68.7
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 1.3e-264 916.4 628 73.2
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 5.0e-264 914.4 674 68.8
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 5.0e-264 914.4 677 70.5
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 1.2e-262 909.8 690 67.1
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 6.1e-262 907.5 691 68.5
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 1.8e-261 906.0 686 68.5
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 4.0e-261 904.8 689 65.0
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 6.7e-261 904.0 684 68.9
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 1.5e-260 902.9 673 69.7
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 2.0e-260 902.5 562 79.7
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 2.6e-260 902.1 683 69.4
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 2.6e-260 902.1 675 68.7
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 4.4e-260 901.4 688 67.9
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 6.3e-259 897.5 628 72.0
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 6.3e-259 897.5 681 68.7
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 1.1e-258 896.7 617 69.2
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 3.1e-258 895.2 630 72.1
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 7.0e-258 894.0 630 71.9
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 9.1e-258 893.6 629 71.9
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 2.0e-257 892.5 630 71.7
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 4.5e-257 891.3 629 71.7
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 5.7e-252 874.4 691 65.7
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 8.3e-251 870.5 559 78.5
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 1.2e-249 866.7 649 68.7
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 3.5e-249 865.1 664 68.4
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.6e-238 829.7 560 72.5
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 4.0e-237 825.1 659 64.3
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 5.2e-237 824.7 673 64.8
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 2.0e-236 822.8 799 55.8
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 1.7e-235 819.7 804 57.0
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 4.6e-225 785.0 599 64.3
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 3.0e-224 782.3 689 62.3
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 7.3e-223 777.7 605 66.8
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 4.0e-205 718.8 790 51.3
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 1.7e-203 713.4 623 58.4
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 5.6e-199 698.4 475 75.2
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 9.9e-188 661.0 440 73.4
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 7.0e-149 531.9 378 70.9
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 4.4e-143 512.7 396 63.1
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 7.2e-130 468.8 524 48.9
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 9.8e-119 431.8 565 45.7
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 6.0e-108 396.0 349 60.5
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 5.0e-107 392.9 273 72.2
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 6.6e-107 392.5 293 65.5
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.4e-93 347.4 331 58.0
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.4e-93 347.4 331 58.0
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 5.8e-87 326.2 555 37.5
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.6e-84 318.2 229 66.4
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 8.4e-70 269.2 235 62.1
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 3.8e-62 243.8 590 31.5
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.1e-58 232.3 252 49.6
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.5e-50 204.5 244 51.6
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 5.0e-46 190.3 180 53.3
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.8e-41 173.7 146 63.7
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 8.2e-33 146.4 138 55.1
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 7.0e-32 143.3 124 57.3
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 2.2e-09 68.6 91 39.6
Cre07.g348500 Chlamydomonas reinhardtii HOM05D006589 ORTHO05D008350 4.5e-07 60.8 79 35.4


User provided reference genes

Program Settings