Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.2e-140 503.1 244 100.0
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 1.1e-136 490.0 244 97.5
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 5.4e-136 487.6 244 97.1
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 9.9e-130 466.8 243 93.0
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 5.1e-118 427.9 244 83.2
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 1.5e-114 416.4 244 81.6
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 4.2e-112 408.3 243 78.6
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 9.3e-112 407.1 244 78.3
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 3.5e-111 405.2 245 78.8
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 73.8
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 78.3
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 2.5e-109 399.1 244 75.0
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 2.5e-109 399.1 242 76.0
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 3.3e-109 398.7 245 75.5
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 4.3e-109 398.3 244 77.5
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 5.6e-109 397.9 244 75.0
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 9.6e-109 397.1 244 76.2
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 9.6e-109 397.1 243 77.4
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 1.3e-108 396.7 244 76.6
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 1.3e-108 396.7 244 75.0
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 4.8e-108 394.8 244 75.0
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 8.1e-108 394.0 245 75.1
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 8.1e-108 394.0 243 77.4
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.1e-107 393.7 245 75.1
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 1.4e-107 393.3 243 75.3
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 74.6
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 2.4e-107 392.5 244 73.8
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 5.3e-107 391.3 245 74.3
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.3e-107 391.3 245 74.3
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 6.9e-107 391.0 285 68.1
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 9.0e-107 390.6 242 73.6
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 1.5e-106 389.8 244 74.6
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 2.0e-106 389.4 244 74.2
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.6e-106 389.0 245 73.9
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 3.4e-106 388.7 244 73.8
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 3.4e-106 388.7 245 74.3
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 5.8e-106 387.9 245 74.3
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 9.9e-106 387.1 245 73.9
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 9.9e-106 387.1 243 75.3
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 1.3e-105 386.7 242 71.9
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 1.3e-105 386.7 231 77.9
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 1.7e-105 386.3 229 79.0
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 2.9e-105 385.6 242 71.1
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.9e-105 385.6 244 73.8
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.9e-105 384.8 244 73.4
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 4.9e-105 384.8 242 73.6
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 6.4e-105 384.4 275 67.6
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 8.4e-105 384.0 242 71.9
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 1.1e-104 383.6 242 70.2
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.1e-104 383.6 259 71.8
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 1.4e-104 383.3 242 69.8
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 1.4e-104 383.3 243 70.8
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.9e-104 382.9 245 73.5
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.9e-104 382.9 243 71.2
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.9e-104 382.9 245 73.5
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 3.2e-104 382.1 246 72.4
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 4.2e-104 381.7 242 70.7
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 4.2e-104 381.7 296 63.9
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 5.4e-104 381.3 276 67.4
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 9.3e-104 380.6 244 73.0
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.2e-103 380.2 242 69.4
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.2e-103 380.2 242 70.7
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.2e-103 380.2 244 71.3
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 2.1e-103 379.4 245 74.3
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 2.7e-103 379.0 242 70.7
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 4.6e-103 378.3 242 74.4
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 6.0e-103 377.9 244 72.5
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 7.9e-103 377.5 244 70.9
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.3e-102 376.7 244 71.7
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.8e-102 376.3 242 70.2
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 1.8e-102 376.3 245 73.5
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 2.3e-102 375.9 245 73.5
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 3.0e-102 375.6 242 69.4
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 3.0e-102 375.6 245 73.5
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 3.9e-102 375.2 244 70.9
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 3.9e-102 375.2 242 69.4
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 3.9e-102 375.2 245 72.2
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 5.1e-102 374.8 245 71.0
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.5e-101 372.5 245 71.0
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 3.3e-101 372.1 231 75.3
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.4e-99 366.7 230 76.1
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 1.4e-99 366.7 245 71.8
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 4.0e-99 365.2 244 68.4
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 9.0e-99 364.0 245 70.2
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 2.6e-98 362.5 328 58.2
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 4.5e-98 361.7 244 68.0
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.8e-98 361.3 301 64.5
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 5.8e-98 361.3 254 67.7
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 9.9e-98 360.5 241 70.1
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.1e-95 352.8 244 74.2
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.3e-94 350.1 215 75.8
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 3.0e-94 349.0 211 74.9
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.6e-92 343.2 245 68.6
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 2.8e-92 342.4 243 65.4
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.8e-86 323.2 205 73.7
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 7.4e-85 317.8 206 72.8
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 4.8e-84 315.1 252 59.1
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 8.2e-84 314.3 280 53.6
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.4e-83 313.5 206 70.9
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 6.5e-81 304.7 214 71.0
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.2e-80 302.4 244 60.2
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 1.3e-76 290.4 251 54.2
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 3.6e-71 272.3 340 49.1
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 1.1e-67 260.8 316 43.4
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 6.5e-65 251.5 259 49.4
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 8.0e-63 244.6 249 51.0
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 7.0e-59 231.5 125 90.4
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.7e-57 226.9 255 44.7
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 3.8e-57 225.7 242 47.1
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 8.5e-57 224.6 251 47.0
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.3e-52 208.4 134 74.6
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 6.3e-44 181.8 108 74.1
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.5e-40 168.7 84 91.7
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.9e-36 155.6 121 57.9
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.8e-35 153.7 96 74.0
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.2e-23 114.4 83 67.5
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.2e-23 114.4 83 67.5
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 4.4e-21 105.9 72 66.7
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.9e-19 100.5 75 66.7
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 6.6e-17 92.0 61 67.2
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 5.6e-16 89.0 51 74.5
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 2.8e-15 86.7 51 72.5
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 2.8e-15 86.7 51 72.5
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 1.5e-13 80.9 127 38.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 6.4e-12 75.5 43 72.1
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 1.9e-11 73.9 73 47.9
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 2.4e-11 73.6 70 52.9
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 3.0e-09 66.6 38 71.1
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 3.9e-09 66.2 78 42.3
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 8.6e-09 65.1 94 38.3
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.1e-08 64.7 37 70.3
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 9.5e-08 61.6 65 47.7
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.1e-07 60.5 77 46.8
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 3.6e-07 59.7 70 37.1
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 6.2e-07 58.9 76 40.8
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.1e-06 58.2 90 36.7
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.4e-06 57.8 68 39.7
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.4e-06 57.8 77 39.0
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 1.8e-06 57.4 76 43.4
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.8e-06 57.4 79 40.5
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.8e-06 57.4 79 40.5
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 1.8e-06 57.4 73 42.5
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 3.1e-06 56.6 73 46.6
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 3.1e-06 56.6 76 40.8
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 3.1e-06 56.6 75 42.7
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 4.0e-06 56.2 79 40.5
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 4.0e-06 56.2 75 41.3
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 5.2e-06 55.8 78 39.7
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 5.2e-06 55.8 73 43.8
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 5.2e-06 55.8 60 46.7
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 5.2e-06 55.8 79 39.2
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 6.8e-06 55.5 78 38.5
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.8e-06 55.5 92 38.0
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 6.8e-06 55.5 75 42.7
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 6.8e-06 55.5 74 47.3
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 8.9e-06 55.1 60 46.7


User provided reference genes

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