Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g027900 Solanum pennellii HOM05D004758 ORTHO05D006063 0.0e+00 1168.3 872 100.0
Solyc03g097160.4 Solanum lycopersicum HOM05D004758 ORTHO05D006063 0.0e+00 1143.6 870 96.7
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 2.5e-276 955.7 856 84.9
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 2.1e-267 926.0 869 80.3
Nitab4.5_0004530g0070 Nicotiana tabacum HOM05D004758 ORTHO05D006063 3.4e-265 918.7 869 79.3
Nitab4.5_0000021g0710 Nicotiana tabacum HOM05D004758 ORTHO05D006063 9.3e-231 804.3 869 75.0
Dinv29141 Davidia involucrata HOM05D004758 ORTHO05D006063 3.7e-227 792.3 842 73.2
Nitab4.5_0000108g0370 Nicotiana tabacum HOM05D004758 ORTHO05D006063 2.0e-225 786.6 830 68.1
Oeu038086.1 Olea europaea HOM05D004758 ORTHO05D006063 1.3e-221 773.9 839 71.2
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.8e-213 746.9 832 68.0
Hma1.2p1_0419F.1_g149420 Hydrangea macrophylla HOM05D004758 ORTHO05D006063 3.0e-213 746.1 819 70.2
QL09p022998 Quercus lobata HOM05D004758 ORTHO05D006063 2.8e-211 739.6 839 68.2
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 4.8e-211 738.8 873 63.0
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 6.9e-210 734.9 810 68.3
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 9.1e-210 734.6 810 68.4
Nn1g00147 Nelumbo nucifera HOM05D004758 ORTHO05D006063 1.0e-208 731.1 834 67.0
MSTRG.26923 Avicennia marina HOM05D004758 ORTHO05D006063 1.1e-207 727.6 815 74.4
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 3.2e-207 726.1 876 64.7
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 5.5e-207 725.3 873 65.1
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 1.1e-202 711.1 810 65.7
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 9.1e-202 708.0 835 67.1
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 2.6e-201 706.4 814 65.0
Lj3C885T17 Lonicera japonica HOM05D004758 ORTHO05D006063 2.6e-201 706.4 832 68.5
Migut.F00084 Erythranthe guttata HOM05D004758 ORTHO05D006063 4.5e-201 705.7 845 66.2
CDE06G0148 Ceratophyllum demersum HOM05D004758 ORTHO05D006063 7.7e-201 704.9 825 69.3
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 2.9e-200 703.0 839 63.4
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 1.4e-199 700.7 846 65.4
CiPaw.05G215200 Carya illinoinensis HOM05D004758 ORTHO05D006063 2.5e-199 699.9 831 66.7
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 4.2e-199 699.1 813 65.7
MD07G1309100 Malus domestica HOM05D004758 ORTHO05D006063 1.0e-197 694.5 840 67.1
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 3.0e-197 693.0 818 63.6
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 6.7e-197 691.8 829 56.3
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 6.7e-197 691.8 846 64.5
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 8.8e-197 691.4 868 60.6
MBI04_g20348_MAGBIO Magnolia biondii HOM05D004758 ORTHO05D006063 7.4e-196 688.3 840 60.1
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 9.7e-196 688.0 846 66.4
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 1.3e-195 687.6 872 60.2
GSVIVG01024351001 Vitis vinifera HOM05D004758 ORTHO05D006063 1.3e-195 687.6 832 68.1
SalBow4G2121 Salvia bowleyana HOM05D004758 ORTHO05D006063 1.7e-195 687.2 852 64.0
SalBow4G2875 Salvia bowleyana HOM05D004758 ORTHO05D006063 1.7e-195 687.2 852 64.0
Prupe.2G326400 Prunus persica HOM05D004758 ORTHO05D006063 6.3e-195 685.3 831 66.5
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 4.1e-194 682.6 843 61.1
PSO063G1271 Papaver somniferum HOM05D004758 ORTHO05D006063 5.3e-194 682.2 836 68.7
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 7.0e-194 681.8 874 60.2
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 2.6e-193 679.9 882 59.6
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 3.5e-193 679.5 827 62.2
SGA_v2.0_scaffold18G08524 Striga asiatica HOM05D004758 ORTHO05D006063 1.0e-192 677.9 873 65.8
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 1.7e-192 677.2 825 64.1
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 2.9e-192 676.4 839 61.1
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 2.9e-192 676.4 839 61.1
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 2.9e-192 676.4 813 62.2
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 8.5e-192 674.9 813 63.3
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 1.1e-191 674.5 814 62.5
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 1.9e-191 673.7 813 63.2
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 2.5e-191 673.3 813 62.5
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 2.5e-191 673.3 861 61.0
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 2.5e-191 673.3 885 60.1
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 3.2e-191 672.9 813 61.9
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 3.2e-191 672.9 813 62.4
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 5.5e-191 672.2 813 63.3
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 7.2e-191 671.8 813 62.1
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 1.2e-190 671.0 846 60.9
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 1.2e-190 671.0 813 62.4
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 1.6e-190 670.6 843 60.5
Aqoxy5G01707 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 2.7e-190 669.8 869 61.8
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 3.6e-190 669.5 812 64.8
Aqoxy3G02274 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 1.0e-189 667.9 833 63.1
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 1.0e-189 667.9 843 61.2
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.8e-189 667.2 829 49.9
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 3.0e-189 666.4 809 62.2
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 3.0e-189 666.4 813 63.1
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 1.5e-188 664.1 889 59.3
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 7.5e-188 661.8 828 62.2
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 9.7e-188 661.4 810 62.6
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 2.4e-186 656.8 782 65.3
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 7.0e-186 655.2 812 63.3
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 9.1e-186 654.8 810 64.1
Ciclev10018804m.g Citrus clementina HOM05D004758 ORTHO05D006063 1.7e-184 650.6 838 63.7
Ah.05g168380 Amaranthus hybridus HOM05D004758 ORTHO05D006063 7.2e-183 645.2 847 58.6
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 2.7e-182 643.3 840 64.4
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.6e-182 642.9 840 62.1
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 1.0e-181 641.3 905 57.7
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 3.0e-181 639.8 956 46.4
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 2.0e-180 637.1 791 65.9
EL10Ac1g01635 Beta vulgaris HOM05D004758 ORTHO05D006063 6.3e-179 632.1 843 47.3
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 1.1e-178 631.3 855 61.8
Zm00001eb072270 Zea mays HOM05D004758 ORTHO05D006063 4.1e-178 629.4 849 63.0
MD01G1236400 Malus domestica HOM05D004758 ORTHO05D006063 1.2e-177 627.9 840 63.3
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 5.0e-176 622.5 849 58.3
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 5.5e-175 619.0 843 64.7
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 2.0e-172 610.5 840 58.1
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 1.3e-171 607.8 868 57.9
PSO782G4173 Papaver somniferum HOM05D004758 ORTHO05D006063 3.7e-171 606.3 846 65.4
unitig_748.g6995 Utricularia gibba HOM05D004758 ORTHO05D006063 1.1e-170 604.7 836 64.1
Os04g0592700 Oryza sativa ssp. japonica HOM05D004758 ORTHO05D006063 2.4e-170 603.6 829 64.1
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 4.5e-169 599.4 934 45.1
Cc08_g01720 Coffea canephora HOM05D004758 ORTHO05D006063 7.8e-169 598.6 610 69.5
BcaC03g18514 Brassica carinata HOM05D004758 ORTHO05D006063 1.6e-166 590.9 616 67.0
FAN03G1445 Fragaria x ananassa HOM05D004758 ORTHO05D006063 3.6e-166 589.7 839 63.3
Lalb_Chr13g0297781 Lupinus albus HOM05D004758 ORTHO05D006063 1.1e-157 561.6 600 66.8
HPP92_020800 Vanilla planifolia HOM05D004758 ORTHO05D006063 5.2e-157 559.3 831 55.1
RcHm_v2.0_Chr1g0384251 Rosa chinensis HOM05D004758 ORTHO05D006063 8.3e-155 552.0 630 63.3
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 6.6e-152 542.3 714 63.2
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 2.9e-147 526.9 822 55.2
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 2.7e-145 520.4 540 62.0
Potri.019G047300 Populus trichocarpa HOM05D004758 ORTHO05D006063 2.0e-140 504.2 540 72.0
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 2.9e-139 500.4 824 53.2
Mapoly0155s0010 Marchantia polymorpha HOM05D004758 ORTHO05D006063 4.6e-137 493.0 808 59.4
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 7.8e-137 492.3 542 55.4
Atru.chr10.1077 Acer truncatum HOM05D004758 ORTHO05D006063 6.9e-133 479.2 526 69.6
Zm00001eb429930 Zea mays HOM05D004758 ORTHO05D006063 4.8e-126 456.4 553 56.2
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 5.8e-116 422.9 454 55.7
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 5.5e-106 389.8 541 42.1
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 1.4e-101 375.2 454 50.9
CBR_g29896 Chara braunii HOM05D004758 ORTHO05D006063 3.1e-101 374.0 842 36.8
CSS0032843 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 2.2e-94 351.3 445 52.1
Cre07.g344050 Chlamydomonas reinhardtii HOM05D004758 ORTHO05D006063 1.2e-68 265.8 928 34.1
SEGI_23303 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 7.7e-60 236.5 361 68.1
HanXRQChr15g0491711 Helianthus annuus HOM05D004758 ORTHO05D006063 6.6e-59 233.4 207 59.4
ECA236G3818 Erigeron canadensis HOM05D004758 ORTHO05D006063 3.6e-57 227.6 307 44.3
PGSC0003DMG400013158 Solanum tuberosum HOM05D004758 ORTHO05D006063 5.7e-55 220.3 384 39.6
Atru.chr10.1076 Acer truncatum HOM05D004758 ORTHO05D006063 1.3e-51 209.1 282 61.7
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.7e-51 208.8 186 56.5
Eucgr.K00075 Eucalyptus grandis HOM05D004758 ORTHO05D006063 1.5e-47 195.7 172 55.8
MCO16G091 Micromonas commoda HOM05D004758 ORTHO05D006063 5.0e-43 180.6 879 37.7
Zm00001eb153310 Zea mays HOM05D004758 ORTHO05D006063 5.6e-42 177.2 139 57.6
FAN06G1039 Fragaria x ananassa HOM05D004758 ORTHO05D006063 4.0e-40 171.0 178 46.6
Actinidia34322 Actinidia chinensis HOM05D004758 ORTHO05D006063 2.6e-39 168.3 133 57.1
Cpa.g.sc43.118 Carica papaya HOM05D004758 ORTHO05D006063 4.4e-39 167.5 117 69.2
HanXRQChr12g0362941 Helianthus annuus HOM05D004758 ORTHO05D006063 2.3e-35 155.2 396 30.3
Cc08_g01710 Coffea canephora HOM05D004758 ORTHO05D006063 4.3e-34 151.0 215 67.4
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 4.4e-31 141.0 703 23.5
PRCOL_00002697 Prasinoderma coloniale HOM05D004758 ORTHO05D006063 1.6e-28 132.5 485 40.4
AUR62013586 Chenopodium quinoa HOM05D004758 ORTHO05D006063 1.3e-27 129.4 84 76.2
FAN01G1276 Fragaria x ananassa HOM05D004758 ORTHO05D006063 1.7e-27 129.0 103 59.2
PGSC0003DMG401003900 Solanum tuberosum HOM05D004758 ORTHO05D006063 6.6e-27 127.1 94 69.1
Lalb_Chr13g0297791 Lupinus albus HOM05D004758 ORTHO05D006063 1.8e-24 119.0 84 66.7
SHI02547 Sapria himalayana HOM05D004758 ORTHO05D006063 2.6e-23 115.2 84 63.1
BcaNung04954 Brassica carinata HOM05D004758 ORTHO05D006063 5.8e-23 114.0 84 63.1
MD01G1069700 Malus domestica HOM05D004758 ORTHO05D000275 5.8e-23 114.0 82 65.9
RcHm_v2.0_Chr1g0384241 Rosa chinensis HOM05D004758 ORTHO05D006063 6.4e-22 110.5 84 63.1
Aa31sc12G110 Aethionema arabicum HOM05D004758 ORTHO05D006063 3.3e-18 98.2 152 39.5
Lj3A886T35 Lonicera japonica HOM05D004758 ORTHO05D006063 6.2e-17 94.0 60 73.3
FAN01G2473 Fragaria x ananassa HOM05D004758 ORTHO05D006063 2.4e-16 92.0 106 41.5
HanXRQChr15g0491701 Helianthus annuus HOM05D004758 ORTHO05D006063 2.3e-11 75.5 55 63.6
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 2.5e-10 72.0 43 79.1
MELO3C034796.2 Cucumis melo HOM05D009856 ORTHO05D168594 1.4e-08 66.2 59 52.5
HPP92_020701 Vanilla planifolia HOM05D004758 ORTHO05D006063 4.0e-08 64.7 51 56.9
Ca_21928_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 2.0e-07 62.4 76 43.4
Cpa.g.sc43.119 Carica papaya HOM05D004758 ORTHO05D006063 4.5e-07 61.2 43 69.8


User provided reference genes

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