Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 3.2e-292 1007.7 505 100.0
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 1.3e-290 1002.3 505 99.4
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 7.0e-271 936.8 475 95.2
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 8.0e-251 870.2 531 82.5
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 9.2e-223 776.9 518 77.2
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 6.6e-221 770.8 465 78.3
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 5.6e-220 767.7 453 83.2
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.6e-217 758.8 465 76.3
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 3.4e-217 758.4 464 76.5
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 9.9e-217 756.9 456 78.3
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.1e-215 753.4 517 71.2
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.4e-215 753.1 522 70.5
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 2.4e-215 752.3 518 71.4
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 3.2e-215 751.9 462 77.1
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 2.1e-214 749.2 520 70.0
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 3.5e-214 748.4 464 76.1
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 4.6e-214 748.0 463 74.7
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 3.9e-213 745.0 504 72.4
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.5e-212 743.0 458 75.5
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 4.3e-212 741.5 439 78.1
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.2e-211 740.0 458 75.3
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.6e-211 739.6 521 69.3
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 8.1e-211 737.3 457 75.7
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 1.4e-210 736.5 514 69.1
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 3.1e-210 735.3 464 73.9
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 4.0e-210 734.9 463 73.7
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 2.0e-209 732.6 463 73.7
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 2.0e-209 732.6 460 73.9
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 5.8e-209 731.1 466 74.2
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 7.6e-209 730.7 455 75.4
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 7.6e-209 730.7 463 72.8
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.7e-208 729.6 464 74.1
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 4.9e-208 728.0 493 72.2
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 6.4e-208 727.6 512 70.1
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 2.4e-207 725.7 464 73.3
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.2e-207 725.3 514 68.7
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 7.1e-207 724.2 437 77.1
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 9.3e-207 723.8 514 70.0
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.2e-206 723.4 466 74.0
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 1.6e-206 723.0 459 73.4
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 2.7e-206 722.2 465 74.0
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 4.6e-206 721.5 466 73.8
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 7.8e-206 720.7 510 67.3
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 2.3e-205 719.2 472 73.3
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 4.3e-204 714.9 436 75.7
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 2.8e-203 712.2 464 70.9
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 4.8e-203 711.4 462 72.9
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 6.2e-203 711.1 489 69.3
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.8e-202 709.5 458 72.7
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 4.0e-202 708.4 486 69.5
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 4.0e-202 708.4 463 72.6
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 4.0e-202 708.4 539 66.4
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 1.5e-201 706.4 459 73.4
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 2.0e-201 706.1 459 73.2
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 2.0e-201 706.1 454 72.7
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 2.0e-201 706.1 507 68.0
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 2.6e-201 705.7 463 72.1
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 4.4e-201 704.9 438 73.1
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 4.4e-201 704.9 462 72.9
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 7.6e-201 704.1 451 72.9
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 3.8e-200 701.8 465 71.8
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 3.8e-200 701.8 491 68.8
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.9e-199 699.5 463 71.3
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 1.9e-199 699.5 463 70.2
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.6e-198 694.9 470 70.4
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.0e-197 693.7 512 67.4
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 2.3e-197 692.6 494 67.8
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 3.9e-197 691.8 498 67.5
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 3.9e-197 691.8 494 67.8
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 3.9e-197 691.8 467 70.4
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.1e-196 690.3 437 73.0
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 3.6e-195 685.3 465 70.1
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 8.1e-195 684.1 489 67.5
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 4.5e-193 678.3 499 66.5
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.4e-191 672.5 476 67.9
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 2.3e-189 666.0 519 63.0
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 7.4e-188 661.0 338 95.3
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 4.0e-186 655.2 503 65.0
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 5.8e-185 651.4 489 65.2
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.3e-184 650.2 464 67.0
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.0e-181 640.6 415 74.2
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 3.0e-181 639.0 408 72.8
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 7.4e-180 634.4 447 66.4
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 6.3e-179 631.3 405 72.3
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.2e-177 627.1 464 61.9
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 2.4e-170 602.8 469 61.0
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 3.4e-169 599.0 465 62.6
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 2.0e-161 573.2 508 56.9
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 2.9e-152 542.7 466 60.1
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 8.8e-149 531.2 462 54.8
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 1.7e-147 526.9 456 55.0
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.7e-144 516.9 316 76.9
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.9e-143 513.5 368 69.3
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 4.7e-142 508.8 323 76.8
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 6.3e-139 498.4 443 52.6
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 7.5e-132 474.9 340 69.4
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.1e-126 456.8 387 58.1
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 2.3e-120 436.8 387 54.0
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 4.0e-117 426.0 272 76.8
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 9.8e-116 421.4 308 62.7
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 2.2e-107 393.7 383 50.7
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 2.3e-101 373.6 298 64.4
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.3e-96 357.1 386 50.0
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 6.4e-91 339.0 199 73.4
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 1.1e-85 321.6 463 40.8
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 9.3e-82 308.5 229 62.9
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 9.3e-82 308.5 212 68.9
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 4.0e-77 293.1 226 65.0
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.9e-66 257.7 497 34.0
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 6.9e-53 212.6 121 73.6
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 9.7e-39 165.6 131 57.3
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 6.3e-38 162.9 444 30.6
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 8.5e-27 125.9 91 68.1
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 3.6e-25 120.6 74 74.3
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.6e-25 120.6 89 68.5
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 6.8e-24 116.3 378 26.2
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 9.8e-23 112.5 297 28.6
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 2.2e-22 111.3 73 65.8
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 3.6e-17 94.0 175 30.9
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.8e-16 91.7 64 65.6
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 2.6e-15 87.8 77 53.2
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.9e-14 83.6 89 52.8
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 5.0e-11 73.6 107 38.3
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 8.6e-11 72.8 32 90.6
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 8.6e-11 72.8 78 52.6
HPP92_002841 Vanilla planifolia HOM05D005216 ORTHO05D006453 8.0e-09 66.2 351 23.1
MCO09G155 Micromonas commoda HOM05D005216 ORTHO05D006453 1.0e-08 65.9 378 24.3
Nn8g38966 Nelumbo nucifera HOM05D005216 ORTHO05D006453 5.2e-08 63.5 321 24.6
CAN.G1143.37 Capsicum annuum HOM05D005216 ORTHO05D006453 2.0e-07 61.6 212 27.8
CANSAT56G3252 Cannabis sativa HOM05D005216 ORTHO05D006453 5.7e-07 60.1 334 24.9
Solyc03g121260.3 Solanum lycopersicum HOM05D005216 ORTHO05D006453 7.5e-07 59.7 211 28.0
Sopen03g040070 Solanum pennellii HOM05D005216 ORTHO05D006453 7.5e-07 59.7 211 28.0
PGSC0003DMG400002513 Solanum tuberosum HOM05D005216 ORTHO05D006453 7.5e-07 59.7 211 28.0
TAR636G1794 Trochodendron aralioides HOM05D005216 ORTHO05D006453 9.8e-07 59.3 260 26.5
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 1.3e-06 58.9 36 66.7
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 1.7e-06 58.5 37 62.2
Sabra01G0143000 Salix brachista HOM05D005216 ORTHO05D006453 2.2e-06 58.2 211 26.5
Hma1.2p1_0388F.1_g142040 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 6.4e-06 56.6 211 27.0


User provided reference genes

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