Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 5.7e-147 524.2 268 100.0
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.4e-145 519.6 269 99.6
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 2.0e-144 515.8 269 98.9
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 8.6e-135 483.8 295 86.4
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 9.2e-113 410.6 269 77.0
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 2.7e-112 409.1 269 78.8
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 4.6e-112 408.3 230 92.2
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.7e-111 406.4 270 75.2
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 3.3e-110 402.1 269 76.2
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.2e-109 400.2 270 75.9
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 1.8e-108 396.4 268 75.4
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.2e-107 393.7 281 73.0
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.5e-107 393.3 269 75.1
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 9.9e-107 390.6 270 75.2
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.3e-106 390.2 270 75.6
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.7e-106 389.8 270 74.8
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 6.4e-106 387.9 269 74.7
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 3.2e-105 385.6 269 73.2
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.2e-104 383.6 269 79.2
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.6e-104 383.3 272 73.5
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 3.5e-104 382.1 267 73.0
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 4.6e-104 381.7 269 73.6
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.6e-104 381.7 272 73.2
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 7.8e-104 380.9 270 74.4
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.0e-103 380.6 270 73.0
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.3e-103 380.2 270 73.0
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 2.3e-103 379.4 272 73.9
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 5.1e-103 378.3 270 73.7
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 8.6e-103 377.5 270 71.9
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 8.6e-103 377.5 268 72.8
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.1e-102 377.1 269 72.1
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.5e-102 376.7 271 73.1
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.9e-102 376.3 270 73.0
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 2.5e-102 375.9 269 71.7
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.5e-102 375.9 272 72.1
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 5.6e-102 374.8 269 70.6
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 9.5e-102 374.0 270 73.7
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 9.5e-102 374.0 272 71.0
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 9.5e-102 374.0 269 72.5
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.2e-101 373.6 271 73.1
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.2e-101 373.6 269 71.7
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.6e-101 373.2 271 72.7
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.6e-101 373.2 270 72.2
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 2.1e-101 372.9 271 71.6
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 2.1e-101 372.9 273 72.2
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.1e-101 372.9 272 71.0
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 2.8e-101 372.5 269 72.1
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 2.8e-101 372.5 270 71.5
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 4.7e-101 371.7 271 71.6
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 6.2e-101 371.3 270 71.5
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 6.2e-101 371.3 268 71.6
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 6.2e-101 371.3 269 71.0
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.1e-100 370.5 285 70.5
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.1e-100 370.5 271 70.1
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 2.4e-100 369.4 272 70.2
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.4e-100 369.4 272 70.6
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 3.1e-100 369.0 271 71.6
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 4.0e-100 368.6 269 70.6
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 5.2e-100 368.2 256 77.3
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 5.2e-100 368.2 271 70.1
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 5.2e-100 368.2 258 74.4
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.8e-100 367.9 272 70.2
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.8e-100 367.9 272 70.2
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 6.8e-100 367.9 271 70.8
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 8.9e-100 367.5 269 70.3
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 8.9e-100 367.5 271 70.1
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 1.2e-99 367.1 270 71.5
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 2.6e-99 365.9 282 69.5
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 4.4e-99 365.2 270 71.5
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 5.8e-99 364.8 267 71.9
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-98 363.6 270 71.1
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.3e-98 363.6 270 71.1
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.3e-98 363.6 254 74.0
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.7e-98 363.2 273 70.7
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.8e-98 362.1 270 69.3
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.8e-98 362.1 280 68.2
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 3.8e-98 362.1 271 71.6
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.1e-97 360.5 270 70.7
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 4.2e-97 358.6 273 68.1
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 7.1e-97 357.8 297 64.6
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.2e-96 357.1 270 70.4
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.5e-96 355.5 276 70.7
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 7.8e-96 354.4 284 66.5
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 2.3e-95 352.8 270 69.3
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 6.6e-95 351.3 292 63.4
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 6.6e-95 351.3 268 68.7
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.1e-94 350.5 272 68.4
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.1e-94 350.5 272 68.4
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.5e-94 349.4 271 67.9
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.5e-94 349.4 264 70.5
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.3e-94 349.0 270 68.1
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.3e-94 348.6 270 68.5
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.6e-94 348.2 270 68.1
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.6e-94 348.2 270 68.1
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 7.3e-94 347.8 272 68.0
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 6.2e-93 344.7 270 68.1
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 6.2e-93 344.7 270 67.8
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 8.1e-93 344.4 270 68.1
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.1e-92 344.0 270 68.5
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 6.9e-92 341.3 272 66.9
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 3.4e-91 339.0 305 60.0
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 3.4e-91 339.0 305 60.0
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 5.8e-91 338.2 342 55.3
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 5.8e-91 338.2 271 69.4
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 9.9e-91 337.4 271 69.4
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.7e-90 336.7 329 57.1
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 3.8e-90 335.5 272 64.3
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 6.4e-90 334.7 273 65.9
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 1.9e-89 333.2 233 73.4
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 7.1e-89 331.3 269 64.7
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 3.5e-88 328.9 272 63.2
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 6.0e-88 328.2 271 68.6
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.0e-87 327.4 272 65.4
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.3e-87 327.0 236 72.9
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.9e-87 325.5 271 66.1
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 6.6e-87 324.7 271 66.1
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.1e-85 319.7 271 63.5
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 3.6e-85 318.9 265 64.2
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 6.2e-85 318.2 317 56.5
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.2e-85 318.2 331 56.5
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.5e-83 313.5 259 65.3
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.6e-83 312.8 232 71.1
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 3.4e-83 312.4 230 70.4
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 1.3e-82 310.5 234 69.2
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.7e-82 310.1 275 62.9
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 1.1e-81 307.4 275 61.1
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.4e-81 306.2 231 69.7
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 3.7e-77 292.4 229 66.8
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 4.8e-77 292.0 278 60.8
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.0e-75 286.6 162 95.1
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 1.3e-74 283.9 230 67.4
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 2.9e-74 282.7 263 59.7
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 1.9e-73 280.0 360 49.2
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 1.8e-71 273.5 266 57.9
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 3.9e-71 272.3 337 48.4
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 3.3e-70 269.2 233 64.8
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 8.2e-69 264.6 276 54.7
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.1e-68 264.2 174 77.0
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.1e-68 264.2 283 54.4
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.3e-66 257.3 231 62.3
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.3e-63 246.5 201 65.7
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 3.9e-63 245.7 259 50.6
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.3e-61 240.7 259 51.0
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.2e-61 240.0 257 53.3
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 2.8e-61 239.6 262 54.2
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 6.3e-61 238.4 270 52.2
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 9.0e-60 234.6 181 69.6
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 5.0e-58 228.8 266 50.4
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 6.1e-56 221.9 180 62.8
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 3.0e-55 219.5 171 66.1
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.5e-51 207.2 160 65.6
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.0e-50 204.5 130 75.4
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 1.4e-49 200.7 169 63.9
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 5.5e-49 198.7 148 66.2
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 7.9e-48 194.9 153 64.7
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 7.9e-48 194.9 254 49.6
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.0e-47 194.5 173 60.7
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 6.7e-47 191.8 212 52.8
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.8e-45 186.4 201 54.7
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 5.0e-42 175.6 142 66.9
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 6.5e-42 175.3 234 46.6
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 6.1e-40 168.7 132 68.9
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.1e-36 157.9 232 43.5
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.0e-35 153.7 125 63.2
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.0e-34 149.1 182 49.5
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.9e-33 147.1 136 55.9
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.0e-31 139.8 162 52.5
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 1.4e-28 131.0 170 45.3
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.2e-26 123.6 91 71.4
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 6.5e-26 122.1 87 72.4
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 9.8e-22 108.2 64 79.7
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.7e-21 106.3 149 47.7
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 3.1e-20 103.2 74 68.9
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 7.7e-19 98.6 67 71.6
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 7.2e-17 92.0 287 31.0
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 8.0e-16 88.6 74 63.5
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.0e-07 61.6 42 73.8
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 1.5e-06 57.8 41 68.3
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.8e-06 55.8 137 31.4


User provided reference genes

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