Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 6.1e-100 367.5 183 100.0
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.8e-99 365.9 183 99.5
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 4.0e-99 364.8 183 98.9
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.8e-94 348.2 183 93.4
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 6.8e-91 337.4 183 90.2
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 8.8e-91 337.0 182 89.0
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 87.4
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 87.4
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.7e-89 331.6 183 88.5
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 4.8e-89 331.3 183 87.4
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 6.3e-89 330.9 183 89.1
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 8.3e-89 330.5 183 88.0
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 89.1
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 86.3
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 87.4
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 87.4
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 88.5
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 86.9
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 86.9
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 85.2
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 85.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 87.4
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 85.2
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 87.4
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 87.4
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 86.9
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.0e-87 325.9 181 86.2
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 86.3
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 86.3
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 84.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 84.2
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 86.9
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 84.2
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 85.8
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 86.9
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.7e-86 322.8 183 85.2
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 84.7
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 85.8
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.7
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 3.3e-85 318.5 181 85.6
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 83.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 82.5
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 82.5
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 83.6
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 82.5
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 83.1
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 83.1
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 83.1
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 83.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 82.0
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 83.1
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.6
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 2.1e-84 315.8 182 81.9
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.1
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 4.7e-84 314.7 182 81.3
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 82.0
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 83.6
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.5
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.5
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.5
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.5
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 82.5
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 81.4
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 82.5
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 79.8
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.0
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 78.7
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 79.8
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.5e-82 309.7 190 78.9
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 2.0e-82 309.3 181 82.3
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 81.4
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 3.4e-82 308.5 182 80.8
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 82.0
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.2
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.2
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 7.5e-82 307.4 182 79.1
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 80.3
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 80.3
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 4.9e-81 304.7 181 80.7
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 6.3e-81 304.3 179 81.0
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.1
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.1
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.1
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.1e-80 303.5 179 80.4
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-80 303.5 181 79.6
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 79.6
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 80.1
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 80.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 2.4e-80 302.4 179 81.0
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.4e-80 302.4 179 80.4
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 78.5
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 79.0
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 78.5
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 78.5
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 9.2e-80 300.4 183 79.8
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 80.3
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 1.2e-79 300.1 179 81.0
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 78.7
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 4.5e-79 298.1 184 78.8
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 79.2
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 7.8e-79 297.4 184 77.7
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 77.0
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.0e-78 297.0 179 80.4
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-78 296.6 152 95.4
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.9e-78 295.4 184 77.7
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 3.8e-78 295.0 182 80.2
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 5.0e-78 294.7 179 78.2
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.5e-77 293.1 183 77.6
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 7.3e-77 290.8 183 76.5
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 7.3e-77 290.8 183 77.0
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 2.1e-76 289.3 184 76.6
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.8e-76 288.9 184 76.1
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 1.4e-75 286.6 228 65.4
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.3e-75 285.8 183 72.7
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 2.0e-74 282.7 219 67.1
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 4.4e-74 281.6 182 73.6
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.2e-73 279.3 185 73.0
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.4e-72 275.8 183 69.4
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 2.7e-71 272.3 155 81.3
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 4.6e-71 271.6 183 76.0
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 4.6e-71 271.6 183 68.3
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 7.8e-71 270.8 184 69.6
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.3e-70 270.0 155 83.2
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 4.3e-69 265.0 183 72.7
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 2.6e-66 255.8 152 79.6
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.1e-64 250.4 181 64.6
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 2.7e-63 245.7 181 69.6
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 3.5e-63 245.4 188 68.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 4.6e-63 245.0 181 67.4
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 2.5e-61 239.2 136 82.4
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 3.3e-61 238.8 183 66.7
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.4e-56 223.4 138 75.4
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.5e-55 218.8 183 63.4
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 3.5e-55 218.8 155 71.6
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.6e-52 209.9 175 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.6e-52 208.8 152 66.4
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 6.2e-52 208.0 178 65.2
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-51 207.2 158 63.9
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.9e-45 186.4 186 48.4
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.5e-45 186.0 149 61.1
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 4.3e-45 185.3 102 87.3
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 3.6e-44 182.2 158 58.9
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 9.0e-43 177.6 102 81.4
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.4e-42 175.6 100 85.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 5.8e-42 174.9 100 81.0
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.3e-41 173.7 132 62.9
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-41 173.3 99 82.8
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.4e-40 169.5 106 75.5
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.2e-40 168.7 134 64.9
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 7.6e-34 147.9 99 69.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 9.9e-34 147.5 81 87.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.3e-33 147.1 105 64.8
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.1e-29 134.0 78 82.1
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.5e-29 133.7 81 77.8
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.5e-26 123.6 101 61.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.1e-24 117.5 106 59.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 2.8e-20 102.8 68 67.6
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 4.9e-17 92.0 106 51.9
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 8.4e-17 91.3 52 82.7
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 5.5e-16 88.6 127 45.7
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.1e-08 64.3 37 75.7
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 3.2e-08 62.8 121 37.2
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 5.5e-08 62.0 81 45.7
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 3.9e-06 55.8 98 33.7
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 3.9e-06 55.8 140 25.0
Nitab4.5_0004485g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 111 29.7
VMungo1309G2077 Vigna mungo HOM05D001645 ORTHO05D001749 8.8e-06 54.7 161 26.1


User provided reference genes

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