Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 2032.3 1041 100.0
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 2013.4 1041 99.1
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1918.7 1041 94.0
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1908.3 1075 91.7
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1843.9 1077 89.0
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1825.4 1042 89.7
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1821.2 1020 91.2
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1754.2 1041 85.2
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1742.6 1042 84.4
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1732.2 1035 84.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1729.1 1023 86.2
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1727.6 1036 84.5
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1720.7 1039 83.9
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1717.6 1016 85.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1706.8 1042 83.8
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1695.2 1045 81.8
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1687.9 1017 83.8
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1683.3 1055 82.0
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1681.0 1041 82.1
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1679.1 1042 81.0
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1676.8 1049 81.6
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1674.1 1016 83.2
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1671.0 1042 81.2
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1671.0 1035 82.2
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1670.6 1043 82.0
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1667.5 1044 81.5
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1659.0 1047 81.1
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1655.2 1045 80.9
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1654.0 1034 81.0
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1652.5 1036 81.1
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1651.7 1036 81.1
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1647.9 1045 80.0
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1645.9 1047 80.4
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1645.9 1066 79.4
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1645.2 1041 80.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1644.0 1039 80.5
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1639.8 1048 80.1
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1639.4 1047 80.3
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1639.4 1042 79.9
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1636.3 1061 79.6
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1631.3 1061 79.5
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1054 79.5
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1629.0 1056 79.6
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1627.8 1052 79.5
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1627.8 1042 79.4
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1625.5 1062 79.4
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1615.1 1055 79.2
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1608.2 1043 78.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1607.8 1043 78.9
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1607.0 1063 77.7
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1595.1 1054 78.4
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1593.9 1036 78.8
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1592.0 1053 78.0
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1588.5 1049 78.5
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1588.2 1043 77.9
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1584.3 1043 77.8
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1582.4 1050 77.2
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1578.9 1051 77.1
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1578.5 1025 78.7
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1577.8 1050 77.0
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1577.0 1046 77.3
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1577.0 956 84.2
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1576.2 1047 77.4
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1566.6 1051 76.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1032 77.8
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1052 76.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1049 76.6
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1563.9 1044 77.6
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1561.2 1052 75.9
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1559.7 1051 75.7
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1558.5 1051 77.2
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1557.7 1045 76.7
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1553.9 1055 75.5
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1553.5 1044 76.2
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1551.2 1053 75.3
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1550.0 1145 71.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1547.7 1053 75.8
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1546.9 1054 75.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1546.2 1054 74.8
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1543.5 1054 75.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1542.7 1054 75.3
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1541.6 1054 75.3
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1052 75.7
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1537.7 1055 76.2
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1533.9 1051 76.1
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1528.5 1055 75.1
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1528.5 1050 75.8
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1527.3 1055 74.9
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1526.9 1050 75.7
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1525.8 1059 74.3
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1523.8 1059 74.2
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1523.5 1058 74.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1523.5 1058 74.2
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1523.1 1061 74.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1513.8 1058 73.9
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1510.7 1093 72.8
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1510.0 1034 74.9
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1506.9 1018 75.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1504.2 1091 72.9
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1501.1 1034 74.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1470.3 1055 72.1
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1440.6 1020 72.0
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1427.9 1042 71.8
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1427.5 1041 72.1
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1397.1 935 76.1
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1395.6 1048 71.7
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1352.0 1031 69.4
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1319.7 1030 67.7
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1318.1 960 69.9
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1312.7 1014 68.7
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1285.0 1019 65.0
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1220.7 826 74.8
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1128.2 1023 58.2
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1106.7 1025 58.6
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1091.6 750 76.3
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.6e-306 1056.2 1033 55.8
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.6e-306 1055.0 1022 54.0
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.0e-300 1036.9 629 85.4
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-292 1009.2 1013 56.1
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 3.3e-291 1005.4 713 70.8
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 8.1e-290 1000.7 713 71.2
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-269 932.9 965 55.8
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-268 929.5 1035 51.5
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 8.7e-268 927.5 620 75.8
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-265 919.8 1040 51.9
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-262 910.6 1040 50.9
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 4.5e-248 862.1 446 99.3
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.3e-242 844.0 552 78.1
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.5e-240 837.0 476 88.7
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.1e-197 693.7 1029 43.8
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 8.3e-194 681.8 437 79.2
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 9.2e-185 651.7 1017 41.3
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.6e-181 641.0 399 79.4
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.7e-178 630.9 481 70.1
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 2.4e-177 627.1 387 82.4
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 2.1e-173 614.0 520 60.8
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 1.7e-167 594.3 1041 37.3
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 2.4e-161 573.9 454 65.2
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.3e-151 541.6 413 65.6
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.5e-144 516.9 373 71.3
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-143 513.1 367 71.7
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-143 513.1 367 71.7
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.6e-139 499.2 372 71.5
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 4.2e-137 493.4 528 55.7
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.2e-136 491.9 322 76.4
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 5.7e-134 483.0 567 50.3
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-125 455.3 587 46.5
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 7.4e-118 429.5 659 42.5
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.1e-116 425.6 1053 31.5
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 2.0e-110 404.8 275 73.8
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.0e-103 382.5 290 66.2
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 9.1e-100 369.4 279 68.1
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 4.1e-92 344.0 195 88.7
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-87 328.6 517 42.2
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 3.9e-82 310.8 396 48.7
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 7.3e-81 306.6 528 35.8
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 2.0e-70 271.9 419 43.7
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.4e-70 271.2 183 74.9
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.6e-66 256.5 229 61.1
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.6e-62 245.0 135 87.4
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 2.9e-61 241.5 137 88.3
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.2e-60 238.0 222 60.4
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-56 224.2 305 44.6
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 8.4e-53 213.4 162 72.8
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.9e-49 202.2 119 86.6
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 6.9e-47 193.7 187 52.9
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.9e-44 185.7 363 38.8
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 3.3e-41 174.9 202 50.0
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-35 155.2 176 52.8
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 7.9e-35 153.7 259 41.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.9e-35 153.7 123 65.9
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.9e-33 149.1 253 40.3
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.8e-29 134.8 91 76.9
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 2.5e-25 122.1 90 65.6
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 4.8e-16 91.3 75 60.0
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.0e-13 83.6 55 78.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.8e-13 81.6 71 52.1
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 6.1e-11 74.3 49 71.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.0e-10 72.0 69 49.3


User provided reference genes

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