Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 3.2e-101 371.7 182 100.0
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.1e-90 336.7 182 91.2
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.6e-90 335.5 169 97.6
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 3.8e-62 241.9 180 69.4
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.9e-59 230.7 167 72.5
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.7e-58 228.0 170 71.2
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.3e-57 226.9 166 70.5
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.7e-57 226.5 167 69.5
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 6.4e-57 224.6 167 71.9
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 2.4e-56 222.6 166 66.3
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 7.0e-56 221.1 178 66.3
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 3.0e-54 215.7 167 68.9
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 8.6e-54 214.2 165 63.6
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 4.3e-53 211.8 182 61.5
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 9.5e-53 210.7 167 64.7
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.6e-52 209.9 167 65.3
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 3.6e-52 208.8 168 63.1
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 3.6e-52 208.8 167 64.7
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 8.0e-52 207.6 165 63.6
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 8.0e-52 207.6 167 62.9
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.0e-51 207.2 167 64.1
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.0e-51 207.2 167 64.7
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 1.4e-51 206.8 167 62.3
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.4e-51 206.8 167 63.5
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.3e-51 206.1 166 63.3
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.3e-51 206.1 168 61.3
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 2.3e-51 206.1 164 64.0
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 2.3e-51 206.1 167 62.9
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 3.1e-51 205.7 173 61.3
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 3.1e-51 205.7 164 64.6
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 3.1e-51 205.7 167 62.9
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 5.2e-51 204.9 167 64.7
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 5.2e-51 204.9 167 62.3
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 5.2e-51 204.9 168 62.5
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.2e-50 203.8 169 63.9
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.2e-50 203.8 165 64.8
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.5e-50 203.4 168 61.3
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.5e-50 203.4 163 67.5
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.5e-50 203.4 167 60.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.0e-50 203.0 168 60.7
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 2.0e-50 203.0 166 60.2
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 2.0e-50 203.0 167 60.5
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 2.6e-50 202.6 167 61.7
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 2.6e-50 202.6 169 61.5
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 4.4e-50 201.8 167 62.3
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 5.8e-50 201.4 166 61.4
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 9.8e-50 200.7 167 62.3
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 9.8e-50 200.7 167 62.9
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 1.3e-49 200.3 164 61.6
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.3e-49 200.3 166 60.2
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.3e-49 200.3 167 61.7
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.3e-49 200.3 167 61.7
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.7e-49 199.9 164 62.2
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.7e-49 199.9 167 61.1
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 2.2e-49 199.5 164 63.4
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 2.2e-49 199.5 163 62.6
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.9e-49 199.1 164 62.2
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 2.9e-49 199.1 167 64.1
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 3.7e-49 198.7 163 60.1
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 3.7e-49 198.7 170 60.6
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 3.7e-49 198.7 167 61.1
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 4.9e-49 198.4 164 61.6
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 4.9e-49 198.4 166 59.6
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 8.3e-49 197.6 163 62.0
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.1e-48 197.2 163 59.5
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.1e-48 197.2 167 60.5
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.9e-48 196.4 166 61.4
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 3.2e-48 195.7 167 60.5
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 3.2e-48 195.7 168 58.3
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 3.2e-48 195.7 167 58.7
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 4.1e-48 195.3 168 60.7
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 4.1e-48 195.3 168 61.3
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 4.1e-48 195.3 165 60.6
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 7.0e-48 194.5 167 60.5
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 9.2e-48 194.1 163 58.9
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.2e-47 193.7 169 58.6
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.2e-47 193.7 167 57.5
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.7e-47 192.6 166 59.0
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 3.5e-47 192.2 171 57.9
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 4.6e-47 191.8 165 57.0
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 6.0e-47 191.4 163 59.5
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.0e-46 190.7 166 57.2
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.7e-46 189.9 189 55.0
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.7e-46 189.9 162 58.6
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 3.0e-46 189.1 168 56.5
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.0e-46 188.3 163 61.3
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 6.6e-46 188.0 168 58.3
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.1e-45 187.2 153 63.4
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.1e-45 187.2 170 55.9
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 1.1e-45 187.2 170 55.3
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.5e-45 186.8 170 55.9
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 3.6e-44 182.2 148 61.5
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 8.1e-44 181.0 182 51.6
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 6.8e-43 177.9 163 55.8
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.4e-42 175.3 165 57.0
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 6.4e-41 171.4 161 53.4
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-40 170.6 164 52.4
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.1e-40 170.6 145 64.1
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.9e-40 169.9 164 53.7
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 9.2e-40 167.5 162 52.5
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.6e-39 166.8 167 53.9
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.0e-39 164.9 144 65.3
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 3.0e-38 162.5 145 61.4
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 3.9e-38 162.2 165 50.3
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.9e-38 162.2 162 51.2
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 6.6e-38 161.4 164 50.6
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.1e-37 160.6 165 50.9
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 9.5e-37 157.5 144 61.1
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.7e-36 155.2 143 62.2
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 5.2e-35 151.8 166 50.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 5.8e-34 148.3 132 59.8
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.1e-32 142.1 117 66.7
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.6e-31 138.7 173 45.7
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.6e-31 138.7 166 45.2
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.7e-30 136.7 173 45.7
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 3.0e-30 136.0 120 55.8
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 5.1e-30 135.2 173 45.1
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 3.6e-28 129.0 162 43.2
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 3.6e-28 129.0 153 46.4
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 8.1e-28 127.9 167 43.7
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.4e-27 127.1 164 43.9
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 6.9e-27 124.8 142 52.8
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.9e-25 119.4 107 61.7
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.2e-23 114.0 145 47.6
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 7.8e-23 111.3 162 42.0
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 2.5e-21 106.3 145 45.5
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.1e-16 90.9 66 60.6
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 3.2e-16 89.4 87 50.6
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 3.0e-14 82.8 183 29.5
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 3.0e-14 82.8 113 46.9
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 3.0e-14 82.8 48 70.8
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 6.7e-14 81.6 75 54.7
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 5.6e-13 78.6 76 56.6
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 7.4e-13 78.2 57 61.4
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 5.3e-11 72.0 159 29.6
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.2e-09 66.6 76 44.7
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 2.9e-09 66.2 76 46.1
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 2.4e-08 63.2 77 44.2
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.7e-06 54.7 40 72.5


User provided reference genes

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