Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 2.2e-188 662.5 435 100.0
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 8.0e-175 617.5 452 93.1
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.9e-147 526.6 623 65.0
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 1.0e-145 520.8 437 75.5
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 9.3e-139 497.7 441 71.2
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 9.6e-128 461.1 441 68.5
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.2e-98 364.4 437 64.8
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 7.4e-96 355.1 445 54.8
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 4.8e-95 352.4 465 52.9
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 8.2e-95 351.7 458 56.3
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 2.4e-94 350.1 436 55.0
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 1.2e-93 347.8 454 56.4
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 1.5e-91 340.9 464 51.3
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 9.4e-91 338.2 441 55.6
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 8.0e-90 335.1 439 52.4
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.2e-88 331.3 435 53.1
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.7e-87 327.4 450 51.8
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 1.7e-87 327.4 439 60.4
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 3.7e-87 326.2 443 52.1
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.8e-86 323.9 442 53.2
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.4e-86 323.6 448 51.3
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 4.1e-86 322.8 453 53.0
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 4.1e-86 322.8 445 50.8
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.6e-85 320.9 441 51.9
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 2.7e-85 320.1 464 52.6
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 7.7e-85 318.5 443 52.1
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 7.7e-85 318.5 459 52.9
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.7e-84 317.4 459 52.7
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 5.0e-84 315.8 468 50.6
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 5.0e-84 315.8 484 49.8
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 5.0e-84 315.8 490 50.0
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 1.5e-83 314.3 495 50.7
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.5e-83 313.5 458 52.4
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 3.2e-83 313.2 456 52.9
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 1.6e-82 310.8 458 48.0
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 1.6e-82 310.8 466 48.1
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 1.6e-82 310.8 438 52.1
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 2.7e-82 310.1 471 47.6
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 8.0e-82 308.5 486 45.1
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.8e-81 307.4 461 50.8
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.8e-81 307.4 461 50.8
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 2.3e-81 307.0 434 51.8
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 5.2e-81 305.8 468 48.7
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 6.8e-81 305.4 486 47.9
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 8.8e-81 305.1 502 44.2
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 7.5e-80 302.0 444 53.4
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 9.8e-80 301.6 484 44.0
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 1.3e-79 301.2 451 52.3
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 2.2e-79 300.4 451 52.1
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 2.8e-79 300.1 540 46.1
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 8.3e-79 298.5 451 49.9
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.4e-78 297.7 442 48.0
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.8e-78 297.4 451 49.7
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 5.4e-78 295.8 572 41.4
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 5.4e-78 295.8 440 55.7
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 7.0e-78 295.4 470 46.2
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 9.1e-78 295.0 494 57.3
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.5e-77 293.1 478 56.1
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.5e-77 293.1 478 56.1
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 4.5e-77 292.7 457 46.8
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 5.9e-77 292.4 437 53.1
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 2.3e-76 290.4 455 46.8
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 5.0e-76 289.3 507 45.6
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 1.1e-75 288.1 452 48.0
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.9e-75 287.3 449 46.3
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 7.2e-75 285.4 471 48.8
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 3.6e-74 283.1 433 53.6
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 6.1e-74 282.3 478 46.0
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 1.0e-73 281.6 580 43.3
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 6.8e-73 278.9 589 45.5
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 8.9e-73 278.5 518 42.5
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.6e-72 276.9 475 46.7
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.4e-72 276.6 497 45.5
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 9.8e-72 275.0 493 45.0
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 3.2e-70 270.0 542 50.9
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 9.2e-70 268.5 524 41.0
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 3.5e-69 266.5 526 49.0
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 8.6e-68 261.9 490 51.8
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 5.6e-67 259.2 522 45.2
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 2.1e-66 257.3 481 44.7
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.4e-65 254.6 564 38.5
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.4e-65 254.6 624 38.9
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.4e-65 254.6 624 38.8
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.8e-65 254.2 501 43.7
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.1e-65 253.4 583 41.5
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 5.2e-65 252.7 623 39.3
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.8e-65 252.3 609 39.2
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 6.8e-65 252.3 543 42.0
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.3e-63 248.1 539 47.1
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 9.2e-62 241.9 461 42.1
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 2.7e-61 240.4 453 43.7
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 2.7e-61 240.4 455 44.4
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 6.0e-61 239.2 523 39.2
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 3.3e-59 233.4 598 45.2
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 6.2e-58 229.2 170 77.1
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 8.1e-58 228.8 515 40.8
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 8.1e-58 228.8 625 44.8
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.8e-57 227.6 232 61.6
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 2.6e-56 223.8 539 38.0
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 6.4e-55 219.2 556 36.2
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.4e-54 216.1 434 48.8
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 2.1e-50 204.1 172 66.9
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.8e-49 201.1 189 64.6
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 1.1e-46 191.8 460 39.8
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.2e-39 167.5 348 42.2
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 1.4e-38 164.9 516 34.9
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.2e-37 161.8 192 55.2
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 1.3e-36 158.3 203 50.2
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.6e-34 151.4 91 86.8
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.8e-34 150.6 408 34.3
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 6.2e-34 149.4 95 85.3
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.4e-33 148.3 178 52.8
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 4.0e-33 146.7 161 59.0
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.2e-32 145.2 89 86.5
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 3.8e-31 140.2 82 90.2
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 6.4e-31 139.4 151 55.6
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.3e-28 131.7 352 39.2
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 2.8e-26 124.0 103 63.1
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.1e-25 122.1 96 71.9
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 2.4e-25 120.9 98 70.4
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 6.0e-21 106.3 174 37.4
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 7.9e-21 105.9 96 63.5
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.8e-20 104.8 405 38.3
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.3e-18 98.6 62 83.9
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 4.8e-18 96.7 154 45.5
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 4.0e-17 93.6 60 80.0
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 9.0e-17 92.4 82 67.1
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 3.4e-16 90.5 53 84.9
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.7e-15 88.2 95 50.5
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 2.5e-14 84.3 183 35.0
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.0e-12 77.4 91 48.4
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 3.9e-12 77.0 68 60.3
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.3e-11 73.6 80 47.5
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.0e-08 64.7 69 60.9
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 7.6e-08 62.8 51 66.7
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 6.5e-07 59.7 184 27.7
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 1.9e-06 58.2 63 63.5


User provided reference genes

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