Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 0.0e+00 1101.7 646 100.0
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 0.0e+00 1101.3 646 99.8
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 0.0e+00 1080.5 653 97.2
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 4.7e-280 967.6 659 86.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 6.1e-280 967.2 656 86.1
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.2e-278 963.0 659 86.3
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 2.1e-264 915.6 660 82.1
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.1e-228 797.0 659 71.0
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 9.6e-225 783.9 653 72.9
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.2e-219 766.9 647 68.2
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 5.3e-215 751.5 646 67.5
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 6.3e-208 728.0 661 64.6
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.4e-207 726.9 661 65.1
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 5.3e-207 724.9 661 63.5
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 6.9e-207 724.5 657 66.4
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.6e-206 722.6 662 63.9
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 5.5e-204 714.9 659 63.6
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 7.2e-204 714.5 659 63.1
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 2.1e-203 713.0 662 66.3
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 7.9e-203 711.1 661 65.4
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.8e-202 709.9 663 65.8
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.9e-202 708.8 663 65.9
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 3.3e-201 705.7 660 63.0
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 7.4e-201 704.5 661 65.5
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 9.7e-201 704.1 663 63.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 6.3e-200 701.4 648 63.4
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.3e-200 701.4 668 66.8
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 8.2e-200 701.0 659 62.1
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.1e-199 700.7 665 60.8
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.8e-199 699.9 659 62.4
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.1e-199 698.7 666 66.5
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.5e-198 696.8 661 61.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.5e-198 696.8 662 62.4
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.6e-198 696.0 660 60.9
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 5.9e-198 694.9 660 61.5
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 5.9e-198 694.9 653 64.6
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.7e-197 693.3 655 61.7
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.8e-197 692.2 660 60.9
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 5.0e-197 691.8 649 63.6
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 6.5e-197 691.4 663 60.2
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.5e-197 691.0 660 60.9
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-196 690.6 660 60.8
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.4e-196 687.6 662 62.4
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 4.7e-195 685.3 660 63.6
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 4.7e-195 685.3 660 63.6
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.0e-194 684.1 660 62.1
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.3e-194 682.9 660 60.5
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 2.3e-194 682.9 653 59.3
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 3.0e-194 682.6 661 60.5
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 4.0e-194 682.2 660 61.4
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 5.2e-194 681.8 655 61.7
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 5.2e-194 681.8 664 59.8
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 5.2e-194 681.8 665 60.9
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.5e-193 680.2 666 58.7
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.6e-193 679.5 667 60.0
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 2.2e-192 676.4 658 60.9
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.2e-192 676.4 674 58.2
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 3.7e-192 675.6 665 62.9
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.4e-191 673.7 665 60.0
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.2e-190 670.6 658 60.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.2e-190 670.6 661 64.0
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 4.5e-190 668.7 664 58.3
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 7.7e-190 667.9 658 60.5
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 2.1e-187 659.8 655 64.3
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 2.3e-186 656.4 662 64.4
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 3.0e-186 656.0 674 61.3
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 2.0e-185 653.3 650 62.8
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.4e-185 652.5 662 59.1
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 4.4e-185 652.1 659 58.6
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 9.8e-185 651.0 537 67.2
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.7e-184 650.2 645 62.0
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.4e-183 647.1 663 61.5
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 4.1e-183 645.6 652 56.6
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 3.2e-180 636.0 653 59.3
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.2e-180 636.0 653 55.3
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.8e-178 630.2 652 56.7
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.8e-178 630.2 653 56.7
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.0e-178 629.4 564 64.4
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 4.0e-178 629.0 658 55.2
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 4.0e-178 629.0 650 54.6
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 3.4e-177 625.9 653 55.0
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 5.7e-177 625.2 653 55.0
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 5.7e-177 625.2 657 56.3
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 9.8e-177 624.4 657 55.4
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 3.7e-176 622.5 663 58.8
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.4e-175 620.5 657 54.8
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.8e-175 620.2 655 58.9
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 4.5e-174 615.5 652 57.8
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 7.7e-174 614.8 660 55.8
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.7e-173 613.6 657 55.1
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.3e-173 613.2 656 58.5
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 1.1e-172 610.9 659 55.4
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 7.2e-172 608.2 661 58.9
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 9.5e-172 607.8 653 54.1
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.2e-171 607.4 656 55.0
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.2e-171 607.4 656 55.0
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.7e-171 605.5 656 55.9
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.0e-171 604.7 613 59.1
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 3.0e-170 602.8 671 56.3
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 3.0e-170 602.8 664 53.3
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.2e-169 600.9 647 53.8
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.5e-169 600.5 659 53.7
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.5e-169 600.5 661 54.2
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.0e-169 600.1 659 61.2
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.6e-169 599.7 663 57.5
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.5e-169 598.2 669 55.2
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-168 596.7 660 53.3
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-167 594.3 661 53.7
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.1e-167 594.3 597 59.0
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.8e-167 593.6 671 54.4
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 4.1e-167 592.4 656 58.5
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.0e-167 591.7 662 54.2
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.0e-167 591.7 660 55.3
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-166 590.9 661 53.9
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.2e-163 580.9 663 53.8
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 3.6e-163 579.3 663 55.1
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.6e-163 579.3 546 60.1
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.6e-163 579.3 546 60.1
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.7e-160 570.5 653 54.4
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.2e-160 570.1 654 51.4
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.4e-159 566.6 655 56.9
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-158 563.9 656 52.0
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.0e-158 562.0 643 55.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 5.6e-156 555.4 663 51.4
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 9.5e-156 554.7 654 53.2
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 9.5e-156 554.7 653 52.8
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 8.1e-155 551.6 669 51.3
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.8e-154 550.4 664 51.2
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.7e-152 543.9 657 51.1
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.7e-152 543.9 556 56.1
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.7e-152 542.7 651 51.3
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.6e-150 537.3 671 52.8
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 2.7e-150 536.6 652 53.1
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.5e-148 530.0 657 48.9
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.3e-146 523.5 660 49.7
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 4.3e-140 502.7 664 48.6
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.8e-138 497.3 643 54.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.4e-138 496.9 649 49.3
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.1e-138 496.5 666 48.3
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 4.0e-138 496.1 535 55.7
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.2e-137 494.6 653 48.7
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 2.6e-137 493.4 674 46.3
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.4e-137 492.7 677 46.8
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 9.3e-135 485.0 618 49.8
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 7.8e-134 481.9 678 45.6
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 4.3e-132 476.1 611 49.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 5.8e-129 465.7 654 47.4
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.5e-124 451.1 402 68.9
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.1e-119 434.9 685 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.1e-116 424.9 653 44.9
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 7.4e-116 422.2 614 46.1
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.2e-103 380.2 402 57.0
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.3e-101 374.8 421 53.7
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 3.9e-101 373.2 402 56.5
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 2.8e-91 340.5 653 43.6
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.8e-91 340.5 310 61.6
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.1e-86 324.3 663 38.2
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 6.7e-85 319.3 542 42.4
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.2e-80 304.3 581 41.7
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 5.7e-76 289.7 539 44.0
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.4e-74 285.0 434 43.1
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 4.2e-71 273.5 227 67.8
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.0e-64 252.3 633 38.2
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 2.0e-49 201.4 266 43.6
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 4.6e-33 147.1 113 63.7
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.3e-31 139.8 222 46.8
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 4.0e-29 134.0 77 85.7
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.5e-25 120.9 109 55.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 3.3e-23 114.4 72 79.2
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.2e-22 112.5 153 46.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.2e-22 112.5 386 26.4
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.7e-19 102.1 61 77.0
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.4e-18 97.1 78 69.2
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 9.3e-18 96.3 93 66.7
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.5e-17 94.4 74 62.2
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 3.6e-14 84.3 123 44.7
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 9.9e-12 76.3 60 63.3
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 8.4e-11 73.2 279 26.9
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 9.3e-10 69.7 471 23.4
Lj8E171T0 Lonicera japonica HOM05D003743 ORTHO05D004311 7.4e-07 60.1 78 73.1


User provided reference genes

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