Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 0.0e+00 1477.2 755 100.0
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 0.0e+00 1422.1 755 96.6
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 0.0e+00 1401.3 755 95.1
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 0.0e+00 1338.6 755 90.9
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 0.0e+00 1302.3 780 86.8
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 0.0e+00 1237.2 748 85.8
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 0.0e+00 1230.7 709 89.8
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 0.0e+00 1115.9 755 76.8
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 0.0e+00 1097.0 744 76.3
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1085.1 756 74.7
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 0.0e+00 1082.4 759 75.1
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1079.7 749 74.5
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 0.0e+00 1077.4 750 75.2
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 5.2e-312 1073.9 758 74.7
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 5.2e-312 1073.5 746 74.4
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.6e-311 1071.2 746 74.4
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.4e-307 1059.3 761 72.8
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 1.8e-307 1058.9 755 73.9
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 3.1e-307 1058.1 752 74.1
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 4.0e-307 1057.7 751 73.8
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 3.4e-306 1054.7 751 74.3
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 4.5e-306 1054.3 755 73.8
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 4.5e-306 1054.3 752 73.9
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 7.6e-306 1053.5 746 74.0
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 2.2e-305 1052.0 752 73.3
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 754 73.5
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 6.5e-305 1050.4 752 73.7
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 1.1e-304 1049.7 749 72.8
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 1.9e-304 1048.9 756 73.3
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.9e-304 1048.9 747 74.3
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 1.9e-304 1048.9 751 73.1
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 4.2e-304 1047.7 746 73.9
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 4.2e-304 1047.7 798 69.9
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 9.3e-304 1046.6 762 72.8
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 748 74.1
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.1e-303 1045.4 748 71.1
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.1e-303 1045.4 753 74.2
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 6.0e-303 1043.9 764 73.0
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 760 72.9
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 6.7e-302 1040.4 748 73.8
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 4.8e-300 1034.2 751 73.2
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 4.8e-300 1034.2 750 73.3
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.4e-299 1032.7 755 71.4
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 3.1e-299 1031.6 758 72.8
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 3.4e-298 1028.1 754 71.0
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 4.5e-298 1027.7 751 71.4
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 1.7e-297 1025.8 756 71.4
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.0e-297 1024.2 759 72.1
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 8.4e-297 1023.5 756 71.2
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.1e-296 1023.1 697 76.6
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 4.2e-296 1021.1 795 68.6
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 1.2e-295 1019.6 756 71.0
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 1.6e-295 1019.2 758 71.1
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 4.6e-295 1017.7 755 69.4
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 6.1e-295 1017.3 749 72.2
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 7.9e-295 1016.9 753 71.3
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 7.9e-295 1016.9 762 70.6
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 3.0e-294 1015.0 745 71.5
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 5.1e-294 1014.2 758 70.7
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 6.7e-294 1013.8 756 71.4
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 8.7e-294 1013.4 749 70.6
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.9e-293 1012.3 751 70.8
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 2.5e-293 1011.9 752 70.1
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.3e-293 1011.5 767 70.9
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 9.7e-293 1010.0 740 70.5
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 5.3e-291 1004.2 785 69.0
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 6.9e-291 1003.8 757 69.9
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.2e-290 1003.0 781 68.4
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 4.5e-290 1001.1 752 71.5
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 7.7e-290 1000.3 760 70.1
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 1.0e-289 1000.0 757 69.9
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 1.7e-289 999.2 753 71.0
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 1.4e-288 996.1 750 70.1
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 3.2e-288 995.0 753 70.8
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.6e-287 992.6 770 69.0
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 4.6e-287 991.1 747 68.7
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 7.9e-287 990.3 753 68.8
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 5.7e-285 984.2 752 70.6
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 4.8e-284 981.1 752 70.5
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.1e-283 978.4 759 69.4
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 5.3e-283 977.6 752 69.8
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 3.4e-282 974.9 753 68.5
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.2e-281 972.2 759 69.6
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 4.4e-277 958.0 749 68.4
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.5e-272 943.0 661 74.3
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.4e-270 936.4 699 70.7
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 4.0e-270 934.9 708 68.6
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 3.3e-269 931.8 658 73.7
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 1.1e-267 926.8 754 65.9
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 2.1e-263 912.5 659 73.1
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.1e-259 900.2 746 66.0
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 2.7e-258 895.6 837 58.2
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 2.8e-247 859.0 747 60.8
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.4e-235 820.1 538 77.3
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.0e-234 816.2 752 58.8
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 3.1e-222 775.8 503 79.9
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.7e-220 770.0 728 59.9
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.9e-216 756.5 556 71.6
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 3.4e-213 745.7 557 70.9
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 1.1e-211 740.7 610 63.8
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.2e-188 663.3 522 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 2.5e-179 633.3 620 55.2
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.1e-178 630.2 699 54.1
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 1.2e-170 604.4 430 72.6
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.5e-165 585.9 425 71.5
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 5.0e-164 582.4 447 68.9
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.8e-150 537.3 439 65.8
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.7e-138 496.1 417 62.8
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 2.8e-135 486.9 428 60.5
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.4e-134 484.6 428 60.3
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.4e-134 483.8 405 62.5
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 8.0e-122 442.2 352 66.8
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.4e-120 436.8 352 66.2
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.7e-117 427.2 503 51.9
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 6.9e-97 359.4 224 81.7
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 3.1e-89 334.0 267 69.7
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 3.2e-86 323.9 235 71.9
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 7.4e-67 259.6 159 81.8
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.0e-64 251.5 232 61.6
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 1.9e-62 245.0 168 72.0
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 6.3e-58 229.9 139 84.2
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 3.0e-52 211.1 142 73.9
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.6e-51 208.0 155 69.0
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.8e-49 201.8 293 43.7
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 3.4e-48 197.6 310 44.2
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.9e-46 191.8 113 83.2
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.2e-46 190.7 131 74.8
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 8.2e-42 176.4 107 83.2
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.8e-41 175.3 97 86.6
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 8.5e-39 166.4 93 88.2
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.4e-33 149.1 155 51.6
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.4e-33 148.3 135 62.2
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 4.5e-32 144.1 294 34.0
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.7e-31 142.1 144 52.1
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 2.3e-28 131.7 93 71.0
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 6.8e-28 130.2 116 62.1
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 3.1e-25 121.3 115 57.4
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 4.2e-22 110.9 132 46.2
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 2.2e-18 98.6 70 71.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 3.7e-18 97.8 58 77.6
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 4.1e-17 94.4 58 74.1
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 2.0e-16 92.0 53 88.7
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 2.9e-15 88.2 125 40.8
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.1e-14 86.3 141 44.0
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 1.9e-14 85.5 52 80.8
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 4.3e-14 84.3 79 54.4
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 3.6e-13 81.3 52 76.9
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 5.8e-11 73.9 44 81.8
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 9.8e-11 73.2 73 57.5
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.2e-09 66.6 36 94.4
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 8.6e-07 60.1 58 65.5
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.3e-06 58.2 29 100.0
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.3e-06 58.2 29 100.0
MELO3C028166.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.5e-06 56.6 29 96.6


User provided reference genes

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