Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 0.0e+00 1377.1 758 100.0
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 0.0e+00 1366.7 758 99.3
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 0.0e+00 1300.0 760 93.6
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 0.0e+00 1249.6 747 84.3
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 0.0e+00 1239.2 740 84.9
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 0.0e+00 1228.4 738 90.8
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 0.0e+00 1115.5 760 79.6
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 0.0e+00 1104.4 760 77.9
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 0.0e+00 1103.6 760 78.0
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 0.0e+00 1095.1 760 77.4
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 0.0e+00 1093.2 760 78.4
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 0.0e+00 1091.3 758 76.9
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 0.0e+00 1090.5 760 78.2
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 0.0e+00 1090.5 760 78.2
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 0.0e+00 1090.1 761 76.5
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 0.0e+00 1087.8 759 76.9
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 0.0e+00 1087.0 760 77.1
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 0.0e+00 1087.0 758 77.4
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 0.0e+00 1086.6 760 76.6
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 0.0e+00 1083.2 760 77.4
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 0.0e+00 1078.9 760 76.1
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 0.0e+00 1078.2 756 76.9
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 0.0e+00 1075.8 760 76.3
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 5.1e-310 1067.4 760 75.8
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 2.5e-309 1065.1 757 76.0
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 9.7e-309 1063.1 759 75.9
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 9.7e-309 1063.1 760 75.3
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 5.3e-307 1057.4 760 74.9
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.6e-306 1055.0 760 73.9
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.6e-306 1055.0 760 73.7
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.7e-305 1052.4 762 73.9
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 6.5e-305 1050.4 759 74.6
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.1e-304 1049.7 758 73.9
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 4.2e-304 1047.7 760 74.5
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 2.1e-303 1045.4 760 74.3
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 6.1e-303 1043.9 767 73.3
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 7.4e-301 1036.9 758 74.4
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 9.7e-301 1036.6 760 73.9
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 1.7e-300 1035.8 760 72.5
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.2e-300 1035.4 775 72.4
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 8.2e-300 1033.5 758 74.3
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 8.2e-300 1033.5 760 73.6
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 3.1e-299 1031.6 833 63.3
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 1.5e-298 1029.2 761 72.9
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 4.5e-298 1027.7 761 72.8
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 5.9e-298 1027.3 784 71.8
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 3.8e-297 1024.6 758 65.7
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 4.2e-296 1021.1 761 74.2
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 9.4e-296 1020.0 762 72.6
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.8e-294 1015.8 763 72.0
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 3.3e-293 1011.5 757 65.4
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 3.7e-292 1008.1 758 71.4
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 6.3e-292 1007.3 761 72.8
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 6.3e-292 1007.3 761 72.3
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 8.2e-292 1006.9 757 72.0
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 2.4e-291 1005.4 758 71.4
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 9.1e-291 1003.4 758 70.7
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 1.5e-290 1002.7 758 70.6
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 1.0e-289 1000.0 800 70.0
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 1.7e-289 999.2 758 70.7
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 6.5e-289 997.3 758 70.6
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 8.5e-289 996.9 758 70.8
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.1e-288 996.5 758 70.3
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 9.4e-288 993.4 760 71.3
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 1.2e-287 993.0 760 72.4
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 2.1e-287 992.3 758 70.1
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 2.1e-287 992.3 758 70.1
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 4.7e-287 991.1 758 70.2
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 8.0e-287 990.3 758 70.3
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 1.0e-286 989.9 758 70.3
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.0e-286 989.9 758 70.2
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 8.8e-286 986.9 758 70.2
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 4.1e-283 978.0 758 69.0
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 5.9e-282 974.2 645 80.3
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.3e-281 973.0 759 67.9
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 1.2e-279 966.5 758 69.3
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 2.7e-279 965.3 672 78.1
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 2.0e-277 959.1 802 65.5
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.3e-276 956.4 721 72.7
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 2.4e-275 952.2 817 64.3
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 9.1e-275 950.3 776 69.6
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 1.3e-273 946.4 750 69.5
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 6.5e-273 944.1 762 67.7
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 5.5e-272 941.0 760 68.0
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 1.8e-270 936.0 672 77.1
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 5.2e-270 934.5 777 59.6
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 6.8e-270 934.1 809 59.2
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 3.4e-269 931.8 798 65.3
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 2.8e-268 928.7 760 67.2
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 3.7e-268 928.3 759 69.7
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 6.3e-268 927.5 718 72.0
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 2.4e-267 925.6 757 68.2
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 1.2e-266 923.3 760 68.3
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 1.7e-260 902.9 672 75.0
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 6.6e-257 891.0 670 72.1
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 2.0e-253 879.4 755 64.5
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 6.4e-252 874.4 757 65.9
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 8.6e-241 837.4 626 73.5
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 1.9e-235 819.7 751 61.0
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 1.7e-228 796.6 563 69.6
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 2.0e-213 746.5 568 66.4
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 2.8e-207 726.1 531 76.6
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 7.9e-202 708.0 768 54.2
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 1.6e-191 673.7 755 50.1
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 9.4e-187 657.9 766 51.7
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 4.3e-184 649.0 770 49.0
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.1e-182 644.4 660 55.3
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 1.1e-174 617.8 512 67.8
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 1.1e-150 538.1 756 46.8
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 2.1e-146 523.9 397 63.7
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 1.8e-142 510.8 442 61.3
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 3.7e-135 486.5 345 70.4
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 5.4e-134 482.6 340 85.0
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 1.9e-107 394.4 276 72.5
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 3.4e-96 357.1 322 59.0
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 1.1e-86 325.5 335 62.4
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 1.9e-75 288.1 752 28.6
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 6.9e-73 279.6 338 57.1
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 2.6e-72 277.7 890 32.5
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 1.0e-71 275.8 825 27.4
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 6.5e-71 273.1 161 78.3
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 5.3e-65 253.4 146 80.8
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.9e-62 245.0 157 68.2
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 3.6e-61 240.7 206 57.3
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.0e-56 224.9 166 64.5
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.0e-48 198.4 156 64.7
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 8.5e-47 193.0 130 66.9
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 1.1e-38 166.0 137 62.8
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 5.5e-38 163.7 794 22.9
SEGI_26304 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 8.0e-37 159.8 124 58.1
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 6.6e-31 140.2 102 73.5
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 1.8e-28 132.1 134 57.5
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 1.2e-27 129.4 91 75.8
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 8.3e-26 123.2 90 73.3
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 1.8e-25 122.1 90 72.2
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 5.4e-25 120.6 142 50.7
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 5.4e-25 120.6 111 58.6
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 9.2e-25 119.8 104 53.8
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 7.8e-24 116.7 90 70.0
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 6.6e-23 113.6 124 46.8
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 7.3e-22 110.2 124 53.2
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 1.6e-21 109.0 69 89.9
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 8.9e-20 103.2 87 58.6
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 1.7e-18 99.0 57 71.9
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.1e-17 96.3 73 61.6
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 3.5e-16 91.3 85 57.6
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 6.6e-15 87.0 124 71.8
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 1.9e-14 85.5 63 55.6
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 2.5e-14 85.1 60 58.3
TAR376G1072 Trochodendron aralioides HOM05D004755 ORTHO05D006137 4.3e-14 84.3 66 57.6
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.4e-11 74.7 45 77.8
CARHR219250 Cardamine hirsuta HOM05D004755 ORTHO05D006137 4.1e-09 67.8 61 55.7
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 4.1e-09 67.8 268 28.7
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 3.5e-08 64.7 35 80.0
FAN07G0204 Fragaria x ananassa HOM05D000453 ORTHO05D000387 6.0e-08 63.9 150 28.7
MBI14_g12781_MAGBIO Magnolia biondii HOM05D000453 ORTHO05D000387 1.3e-07 62.8 155 33.5
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 2.3e-07 62.0 44 72.7
COL.COLO4_37433 Corchorus olitorius HOM05D000453 ORTHO05D000387 3.0e-07 61.6 172 28.5
Gohir.D11G213250 Gossypium hirsutum HOM05D004755 ORTHO05D036105 5.1e-07 60.8 37 78.4
Gorai.007G229200 Gossypium raimondii HOM05D004755 ORTHO05D036105 5.1e-07 60.8 37 78.4
Gohir.A11G209850 Gossypium hirsutum HOM05D004755 ORTHO05D036105 8.6e-07 60.1 37 78.4
TPR.G17575 Trifolium pratense HOM05D001335 ORTHO05D001184 1.1e-06 59.7 106 33.0
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 2.5e-06 58.5 257 23.3
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 3.3e-06 58.2 154 26.0
AT1G24130 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 4.3e-06 57.8 157 33.1
GSVIVG01007589001 Vitis vinifera HOM05D000453 ORTHO05D000387 9.5e-06 56.6 165 29.1


User provided reference genes

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