Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049870 Solanum pennellii HOM05D003404 ORTHO05D004052 5.5e-43 177.2 86 100.0
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 6.3e-15 84.0 133 42.9
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 3.1e-14 81.6 129 43.4
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 3.1e-14 81.6 129 43.4
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 4.5e-13 77.8 133 40.6
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 4.5e-13 77.8 133 40.6
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 4.5e-13 77.8 129 41.9
Os02g0169800 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 2.3e-12 75.5 130 40.0
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 2.9e-12 75.1 129 41.1
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 3.8e-12 74.7 133 39.1
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 6.6e-12 73.9 133 38.3
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 6.6e-12 73.9 133 38.3
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 8.6e-12 73.6 133 38.3
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 1.5e-11 72.8 133 38.3
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 1.5e-11 72.8 133 38.3
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 1.5e-11 72.8 133 38.3
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.5e-11 72.8 130 40.0
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 1.9e-11 72.4 133 39.1
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 1.9e-11 72.4 133 39.1
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 2.5e-11 72.0 133 38.3
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 2.5e-11 72.0 133 38.3
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 2.5e-11 72.0 133 38.3
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 2.5e-11 72.0 133 38.3
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 2.5e-11 72.0 133 37.6
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 2.5e-11 72.0 133 38.3
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 3.3e-11 71.6 131 38.2
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 3.3e-11 71.6 133 38.3
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 3.3e-11 71.6 129 38.8
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 4.2e-11 71.2 133 38.3
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 4.2e-11 71.2 133 38.3
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 4.2e-11 71.2 133 38.3
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 4.2e-11 71.2 133 38.3
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 5.5e-11 70.9 129 38.8
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 5.5e-11 70.9 129 38.8
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 7.2e-11 70.5 133 36.8
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 7.2e-11 70.5 133 39.1
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 9.5e-11 70.1 133 37.6
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 1.2e-10 69.7 129 40.3
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.2e-10 69.7 129 40.3
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 1.2e-10 69.7 129 40.3
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 1.6e-10 69.3 133 37.6
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 1.6e-10 69.3 133 37.6
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 1.6e-10 69.3 133 36.1
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 1.6e-10 69.3 133 37.6
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 1.6e-10 69.3 133 37.6
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 1.6e-10 69.3 133 37.6
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 2.1e-10 68.9 133 37.6
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 2.1e-10 68.9 133 37.6
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 2.8e-10 68.6 129 38.0
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 2.8e-10 68.6 129 38.0
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 2.8e-10 68.6 133 37.6
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 2.8e-10 68.6 133 37.6
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 2.8e-10 68.6 133 36.8
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 3.6e-10 68.2 133 36.1
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 3.6e-10 68.2 133 36.8
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 3.6e-10 68.2 133 37.6
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 4.7e-10 67.8 129 37.2
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 6.1e-10 67.4 133 36.8
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 8.0e-10 67.0 133 36.1
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 8.0e-10 67.0 133 36.1
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 8.0e-10 67.0 133 36.1
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 1.0e-09 66.6 133 38.3
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.0e-09 66.6 133 35.3
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.0e-09 66.6 133 35.3
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 1.4e-09 66.2 133 36.1
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 1.4e-09 66.2 133 36.1
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.4e-09 66.2 129 37.2
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 1.8e-09 65.9 133 36.1
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 1.8e-09 65.9 133 35.3
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 1.8e-09 65.9 133 36.8
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 1.8e-09 65.9 133 36.8
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 1.8e-09 65.9 133 36.8
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 2.3e-09 65.5 133 36.1
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 2.3e-09 65.5 130 37.7
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 2.3e-09 65.5 129 36.4
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 3.0e-09 65.1 133 35.3
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 3.0e-09 65.1 133 35.3
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 3.0e-09 65.1 133 35.3
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 3.0e-09 65.1 131 35.1
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 3.0e-09 65.1 129 37.2
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 4.0e-09 64.7 133 35.3
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 5.2e-09 64.3 133 36.1
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 5.2e-09 64.3 133 36.1
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 5.2e-09 64.3 133 36.1
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 5.2e-09 64.3 133 36.1
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 6.8e-09 63.9 129 34.9
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 6.8e-09 63.9 133 36.1
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 8.9e-09 63.5 129 34.9
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 8.9e-09 63.5 133 34.6
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 8.9e-09 63.5 133 34.6
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 8.9e-09 63.5 133 34.6
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 8.9e-09 63.5 133 34.6
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 8.9e-09 63.5 129 35.7
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 1.2e-08 63.2 133 34.6
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 1.2e-08 63.2 133 34.6
Oeu028473.1 Olea europaea HOM05D003404 ORTHO05D004052 1.5e-08 62.8 133 34.6
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.0e-08 62.4 129 34.9
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 2.0e-08 62.4 129 34.9
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 2.0e-08 62.4 134 34.3
ATR1089G005 Amborella trichopoda HOM05D003404 ORTHO05D004052 9.8e-08 60.1 133 37.6
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 1.3e-07 59.7 125 33.6
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 1.3e-07 59.7 125 35.2
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 4.1e-06 54.7 35 74.3
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 7.0e-06 53.9 36 66.7
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 9.2e-06 53.5 35 71.4
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 9.2e-06 53.5 81 42.0


User provided reference genes

Program Settings