Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 5.2e-128 461.1 234 100.0
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 1.5e-127 459.5 234 99.6
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 2.2e-126 455.7 234 98.7
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 8.9e-120 433.7 234 92.3
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.2e-119 433.3 234 91.9
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 2.4e-101 372.5 296 67.9
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 2.1e-97 359.4 235 77.0
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.6e-95 352.4 236 75.4
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 1.7e-94 349.7 232 77.6
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 4.1e-93 345.1 219 78.1
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 4.1e-93 345.1 232 76.3
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 4.1e-93 345.1 230 76.1
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 4.1e-93 345.1 230 76.1
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 7.1e-93 344.4 230 75.2
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.2e-92 343.6 229 74.2
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.2e-92 343.6 230 75.2
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.2e-92 343.6 230 74.3
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 4.6e-92 341.7 230 76.1
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 3.9e-91 338.6 230 74.8
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 5.1e-91 338.2 227 75.3
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 6.6e-91 337.8 235 71.9
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 8.6e-91 337.4 228 73.2
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 8.6e-91 337.4 232 76.3
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 8.6e-91 337.4 237 74.3
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 1.1e-90 337.0 236 71.6
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 1.5e-90 336.7 231 74.0
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 1.5e-90 336.7 230 73.0
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 2.5e-90 335.9 213 80.3
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 2.5e-90 335.9 224 74.6
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 2.5e-90 335.9 235 71.5
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 2.5e-90 335.9 228 74.1
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 4.3e-90 335.1 231 75.8
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 5.6e-90 334.7 232 72.0
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 9.6e-90 334.0 234 73.5
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.2e-89 333.6 241 70.5
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.2e-89 333.6 233 74.2
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 1.2e-89 333.6 230 74.8
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.1e-89 332.8 234 76.1
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 2.1e-89 332.8 228 73.7
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 3.6e-89 332.0 232 73.7
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 4.7e-89 331.6 240 72.9
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 4.7e-89 331.6 218 75.7
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 4.7e-89 331.6 235 72.8
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 6.2e-89 331.3 234 75.6
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 6.2e-89 331.3 239 73.6
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 6.2e-89 331.3 212 75.5
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 6.2e-89 331.3 236 72.9
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 6.2e-89 331.3 225 74.7
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.1e-88 330.5 234 75.2
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 1.4e-88 330.1 232 75.0
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.8e-88 329.7 229 73.4
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 1.8e-88 329.7 227 72.2
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 4.0e-88 328.6 218 75.2
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 5.2e-88 328.2 206 79.6
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 6.9e-88 327.8 231 71.9
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 8.9e-88 327.4 217 76.0
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.2e-87 327.0 230 73.5
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 2.0e-87 326.2 227 74.9
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 2.6e-87 325.9 205 78.0
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 4.4e-87 325.1 249 67.5
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 5.8e-87 324.7 233 72.5
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 5.8e-87 324.7 233 72.1
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.3e-86 323.6 249 67.1
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 2.2e-86 322.8 206 78.2
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.2e-86 322.8 200 81.0
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 2.2e-86 322.8 206 78.6
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 2.2e-86 322.8 179 90.5
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 2.9e-86 322.4 230 72.2
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 3.8e-86 322.0 232 73.7
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 4.9e-86 321.6 234 71.4
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.1e-85 320.5 232 72.8
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.1e-85 320.5 212 75.0
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.9e-85 319.7 217 75.1
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 2.4e-85 319.3 233 71.2
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 2.4e-85 319.3 235 70.2
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.2e-85 318.9 229 74.2
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 4.2e-85 318.5 207 78.3
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 5.4e-85 318.2 235 69.8
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 7.1e-85 317.8 234 69.7
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 9.3e-85 317.4 207 76.8
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 2.1e-84 316.2 198 79.8
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 4.6e-84 315.1 207 78.3
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.0e-83 313.9 229 70.7
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-83 313.5 207 77.3
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.3e-83 312.8 298 58.1
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 5.1e-83 311.6 234 69.7
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 8.7e-83 310.8 207 77.3
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 8.7e-83 310.8 207 77.3
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.5e-82 310.1 207 76.8
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.5e-82 310.1 207 76.8
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 2.5e-82 309.3 229 70.3
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 4.3e-82 308.5 202 74.3
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.6e-82 308.1 210 75.2
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 1.1e-80 303.9 206 75.2
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 4.0e-80 302.0 206 73.8
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 4.0e-80 302.0 203 75.4
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.6e-79 299.3 184 81.5
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 2.2e-78 296.2 202 73.3
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.6e-76 290.0 211 74.4
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.7e-76 289.3 220 69.1
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.5e-74 283.5 188 76.6
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.9e-74 283.1 299 55.5
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.2e-71 273.9 213 65.7
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 5.5e-69 265.0 199 67.8
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.1e-68 263.1 226 61.5
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.1e-68 263.1 226 61.5
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 6.7e-67 258.1 165 77.6
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.3e-66 255.4 174 74.7
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.3e-65 253.8 161 80.1
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 4.8e-65 251.9 195 65.6
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 9.0e-64 247.7 214 60.7
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 7.6e-63 244.6 172 74.4
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.1e-61 240.7 156 77.6
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.6e-60 235.3 153 77.8
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 7.9e-60 234.6 156 75.6
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 1.6e-57 226.9 153 77.8
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.4e-56 223.8 193 61.1
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 5.3e-56 221.9 216 56.9
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 7.6e-55 218.0 234 56.0
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.4e-53 213.8 159 69.2
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 2.5e-50 203.0 130 80.0
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.3e-50 202.6 210 53.8
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 2.5e-37 159.8 136 61.8
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 2.3e-27 126.7 84 72.6
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 4.8e-25 119.0 191 40.3
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 7.5e-18 95.1 206 31.1
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 1.4e-16 90.9 195 35.9
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 5.4e-16 89.0 62 66.1
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 7.7e-15 85.1 86 53.5
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 1.4e-11 74.3 71 59.2
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 8.8e-11 71.6 52 71.2


User provided reference genes

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