Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 2944.1 1488 100.0
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 2493.0 1520 84.7
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 2484.9 1490 85.7
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 2189.8 1372 83.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 2123.2 1086 98.6
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1920.2 1514 64.7
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1847.8 1536 62.2
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1829.7 1458 63.6
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1822.8 1543 61.9
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1822.0 1500 61.7
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1753.4 973 91.3
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1749.6 1510 59.9
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1726.1 1499 59.4
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1721.4 1506 59.4
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1718.7 1509 58.8
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1703.7 1514 59.1
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1699.1 1511 59.4
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1694.9 1513 58.4
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1686.4 1528 57.4
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1685.2 1517 57.2
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1668.3 1512 56.4
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1659.8 1547 56.9
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1652.5 1504 57.0
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1623.6 1513 55.8
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1620.9 1513 55.6
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1619.4 1512 56.2
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1611.7 1495 57.2
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1610.5 1496 56.6
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1604.3 1518 55.1
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1604.0 1514 55.3
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1597.0 1515 55.6
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1595.1 1495 56.1
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1592.8 1517 57.0
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1587.4 1520 55.5
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1585.9 1506 53.7
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1584.3 1514 55.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1584.3 1507 53.9
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1566.2 1505 55.4
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1565.8 1620 52.2
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1550.4 1492 54.6
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1539.2 1441 56.5
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1538.5 1506 54.4
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1537.3 1509 53.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1535.4 1509 53.2
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1532.3 1510 53.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1528.8 1509 53.3
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1524.2 1523 53.1
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1523.5 1509 53.2
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1521.1 1518 51.8
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1519.2 1509 52.9
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1517.7 1513 53.1
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1511.5 1507 52.6
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1507.3 1509 52.3
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1501.5 1520 51.8
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1497.6 1503 53.0
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1492.2 1493 52.6
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1481.8 1517 52.2
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1480.7 1524 51.6
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1480.7 1524 51.6
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1478.8 1290 58.6
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1477.2 1511 52.8
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1473.0 1517 50.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1467.2 1525 51.0
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1458.0 1497 52.4
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1412.1 1203 60.6
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1395.2 1238 58.6
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1394.8 1136 63.6
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1381.3 1449 50.5
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1375.9 1511 49.2
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1352.0 1505 48.6
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1350.9 1506 48.1
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1350.5 1500 48.1
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1349.7 1511 48.1
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1349.7 1510 48.3
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1349.3 1745 43.6
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1341.6 1508 48.0
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1340.5 1505 47.9
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1330.9 1508 47.6
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1330.1 1535 47.2
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1329.7 1529 49.2
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1326.6 1506 47.6
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1321.2 1544 47.8
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1320.1 1537 46.8
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1316.2 1508 47.9
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1302.3 1503 47.0
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1282.3 1052 63.4
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1263.4 1553 45.7
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1257.7 1161 56.3
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1242.3 1507 47.2
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1220.3 1289 50.2
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1187.2 1508 43.4
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1148.3 1121 54.7
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.6e-257 893.3 1145 44.0
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.9e-253 879.4 1143 44.1
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 4.0e-242 842.8 1518 35.8
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 7.4e-236 822.0 1541 35.9
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 2.1e-235 820.5 1537 35.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.4e-226 790.4 1024 44.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.1e-223 781.6 969 45.4
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.8e-213 747.7 595 64.4
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.0e-209 734.2 601 61.6
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 1.7e-208 731.1 573 64.7
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 5.2e-197 693.0 1401 33.9
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 4.8e-187 659.8 1015 40.0
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.1e-186 658.7 568 60.0
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.6e-185 654.8 1016 39.9
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.1e-182 644.4 693 50.2
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 3.0e-181 640.6 1019 39.5
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.5e-175 619.8 616 54.5
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 3.8e-168 597.0 304 98.0
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.7e-155 555.1 573 53.8
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 6.6e-144 516.5 1032 36.5
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.2e-140 505.8 566 49.1
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 3.6e-134 484.2 478 54.6
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 8.1e-134 483.0 465 59.4
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.1e-128 463.8 570 46.1
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.2e-116 426.0 525 47.8
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-102 378.6 1032 28.7
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 5.9e-100 370.5 506 41.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 3.8e-91 341.3 841 31.2
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.0e-88 333.2 457 41.1
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.8e-80 305.8 542 34.7
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.6e-76 292.0 304 51.6
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-75 289.3 451 40.4
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.9e-75 288.5 320 46.2
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 6.5e-75 287.3 362 42.5
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 2.0e-71 275.8 408 43.4
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 6.3e-70 270.8 391 39.9
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.0e-68 265.8 212 61.3
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-66 259.2 360 41.4
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.2e-62 245.7 209 55.0
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 3.7e-62 245.0 324 40.7
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 4.8e-62 244.6 276 48.9
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.3e-59 235.7 197 58.9
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-57 229.9 293 45.4
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 4.1e-53 214.9 229 51.1
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.5e-52 211.5 247 48.2
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-51 209.9 271 44.6
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.9e-51 208.4 308 42.2
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 2.3e-43 182.6 387 35.1
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.6e-41 175.3 134 61.2
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 4.7e-41 174.9 195 50.3
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 4.4e-39 168.3 192 50.0
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 4.9e-38 164.9 111 69.4
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.9e-37 162.9 195 47.7
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 1.6e-36 159.8 188 47.3
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 7.8e-36 157.5 109 66.1
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 8.1e-33 147.5 196 42.9
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 5.2e-32 144.8 125 54.4
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 3.7e-30 138.7 116 62.9
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 4.6e-28 131.7 114 54.4
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 9.6e-26 124.0 149 44.3
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 2.1e-20 106.3 112 52.7
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-19 103.2 98 58.2
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 8.7e-19 100.9 98 57.1
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-17 95.5 273 27.5
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 9.3e-13 80.9 308 25.3
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.7e-11 76.6 42 88.1
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.0e-11 75.9 61 55.7
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 3.9e-11 75.5 63 58.7
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 2.8e-09 69.3 72 54.2
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 4.0e-08 65.5 173 30.1
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.3e-06 60.5 42 64.3
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 8.4e-06 57.8 91 34.1


User provided reference genes

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