Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 4.7e-191 671.0 334 100.0
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 2.2e-172 609.0 357 86.8
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.2e-165 586.6 336 86.6
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 2.2e-164 582.4 334 85.9
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 1.4e-155 553.1 333 84.1
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 3.3e-152 542.0 368 76.1
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 4.4e-112 408.7 339 63.7
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 6.1e-106 388.3 331 60.1
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 7.7e-101 371.3 336 57.1
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 5.5e-99 365.2 336 57.1
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 4.7e-98 362.1 335 57.6
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 6.8e-97 358.2 336 56.0
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 6.8e-97 358.2 330 57.0
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 6.8e-97 358.2 335 57.9
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 1.2e-96 357.5 336 55.1
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 3.4e-96 355.9 334 56.6
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 4.4e-96 355.5 333 58.0
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 4.4e-96 355.5 340 58.2
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 9.8e-96 354.4 339 57.8
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.3e-92 344.0 327 55.7
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 3.8e-92 342.4 340 54.7
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 3.8e-92 342.4 337 54.6
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 8.5e-92 341.3 317 58.7
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 1.5e-91 340.5 338 53.0
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 1.9e-91 340.1 349 55.3
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 5.5e-91 338.6 335 54.3
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 1.2e-90 337.4 338 55.6
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 6.1e-90 335.1 327 56.9
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 1.4e-89 334.0 311 55.6
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 1.8e-89 333.6 338 53.6
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 2.3e-89 333.2 333 55.6
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 5.2e-89 332.0 337 54.6
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 6.8e-89 331.6 337 54.6
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 2.0e-88 330.1 335 54.0
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 4.4e-88 328.9 335 52.5
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 5.7e-88 328.6 337 54.0
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 5.7e-88 328.6 337 53.1
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 1.7e-87 327.0 335 53.7
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 2.2e-87 326.6 337 53.7
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 3.7e-87 325.9 334 52.7
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 4.9e-87 325.5 343 52.5
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 1.1e-86 324.3 337 52.2
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 1.1e-86 324.3 360 51.7
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 1.4e-86 323.9 383 48.6
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 1.8e-86 323.6 335 51.9
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.1e-86 322.8 333 54.7
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.1e-86 322.8 333 54.7
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.0e-86 321.6 333 54.4
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 2.7e-85 319.7 333 54.1
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 3.5e-85 319.3 335 52.8
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 4.5e-85 318.9 333 52.6
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 5.0e-84 315.5 332 53.0
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 6.6e-84 315.1 335 52.2
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 3.3e-83 312.8 335 52.8
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 4.3e-83 312.4 345 50.1
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 2.1e-82 310.1 335 50.4
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 2.8e-82 309.7 347 51.3
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 4.0e-81 305.8 355 49.9
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 2.0e-80 303.5 328 51.2
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 3.4e-80 302.8 345 50.1
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 4.4e-80 302.4 337 48.4
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 4.1e-78 295.8 345 49.9
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 5.4e-78 295.4 331 49.5
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 2.0e-77 293.5 291 54.6
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 3.5e-77 292.7 329 48.3
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 7.8e-77 291.6 277 58.8
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 1.0e-76 291.2 338 50.0
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.9e-75 287.0 291 53.6
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 2.5e-75 286.6 329 51.4
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 4.3e-75 285.8 328 48.8
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 1.2e-74 284.3 309 48.5
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 2.0e-72 276.9 334 46.1
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 1.7e-71 273.9 345 47.0
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 3.7e-71 272.7 340 46.2
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 1.7e-68 263.8 337 46.6
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 8.6e-68 261.5 309 47.9
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 1.1e-67 261.2 311 47.6
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 1.1e-67 261.2 337 45.4
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 1.5e-67 260.8 332 45.8
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 1.9e-67 260.4 330 44.5
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 1.9e-67 260.4 263 51.3
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 2.5e-67 260.0 354 44.4
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 3.3e-67 259.6 355 44.5
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 1.2e-66 257.7 310 46.5
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 2.8e-66 256.5 202 63.9
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 6.2e-66 255.4 312 46.8
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 2.3e-65 253.4 359 45.1
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 8.9e-65 251.5 265 50.6
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 1.2e-64 251.1 330 43.9
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 2.6e-64 250.0 209 58.9
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 4.4e-64 249.2 314 46.2
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 7.5e-64 248.4 313 44.7
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 7.5e-64 248.4 313 44.7
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 1.7e-63 247.3 313 44.4
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 2.4e-62 243.4 252 53.2
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 3.2e-62 243.0 279 50.2
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 4.1e-62 242.7 333 45.0
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.2e-61 241.1 330 43.9
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 4.6e-61 239.2 271 49.4
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 1.5e-59 234.2 243 50.6
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 4.3e-59 232.6 338 41.1
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 1.5e-56 224.2 231 54.5
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 7.6e-56 221.9 291 44.7
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 9.9e-56 221.5 242 51.2
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 8.4e-55 218.4 251 48.2
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.1e-49 201.4 200 52.0
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 6.4e-47 192.2 190 53.2
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 9.3e-46 188.3 299 41.5
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.8e-45 185.3 203 50.2
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 4.3e-43 179.5 200 47.5
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.6e-42 177.6 143 62.2
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.0e-41 172.9 200 46.0
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 2.0e-40 170.6 206 48.1
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 2.6e-40 170.2 321 37.7
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 5.8e-40 169.1 135 63.7
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 7.6e-40 168.7 198 51.0
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 1.1e-38 164.9 190 45.3
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 1.1e-38 164.9 141 56.7
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.4e-38 164.5 204 44.1
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.7e-37 160.2 208 47.1
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 2.9e-31 140.2 126 56.3
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 5.6e-27 125.9 181 42.5
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 1.9e-22 110.9 80 68.8
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 1.2e-16 91.7 215 32.1
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 1.5e-16 91.3 89 56.2


User provided reference genes

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