Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 2062.3 1061 100.0
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 2041.5 1062 99.2
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1662.1 1069 77.6
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1645.2 1078 76.8
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1639.8 1073 76.3
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1630.5 1072 75.9
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1627.8 1188 74.7
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1622.8 1079 75.8
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1621.7 1081 74.9
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1604.7 1070 75.6
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1602.8 1085 74.2
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1597.4 1072 74.7
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1594.7 1066 75.4
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1589.3 1072 73.7
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1588.2 1070 74.5
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1587.4 1074 74.0
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1586.2 1110 73.6
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1585.9 1093 74.7
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1583.9 1003 77.6
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1582.4 1069 73.7
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1579.3 1072 73.7
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1571.2 1080 73.2
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1570.4 1073 73.4
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1570.1 1073 73.3
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1567.7 1073 73.3
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1565.4 1077 73.5
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1562.4 1139 71.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1560.0 1157 69.7
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1558.9 1072 72.3
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1554.7 1071 74.3
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1548.9 1074 70.8
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1548.5 1073 72.9
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1546.6 1116 74.7
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1545.8 965 80.1
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1542.7 1074 72.4
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1542.3 1067 72.8
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1540.8 1116 71.4
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1534.2 1071 72.5
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1531.9 1083 71.6
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1526.1 997 75.6
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1526.1 997 75.6
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1516.1 1072 70.5
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1513.8 1079 71.7
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1508.0 1063 70.6
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1506.1 1068 70.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1505.3 1092 71.3
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1505.0 1067 72.2
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1503.8 1065 70.9
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1498.0 1078 70.3
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1496.5 1067 71.7
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1495.3 1079 70.5
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1491.5 1067 71.9
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1489.2 1072 69.4
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1488.4 1069 69.6
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1486.9 1067 70.5
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1479.5 1069 70.9
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1478.0 1069 68.9
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1473.4 944 78.7
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1472.6 971 75.0
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1465.7 1068 69.6
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1465.3 1075 69.4
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1462.6 1068 69.5
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1458.4 1068 69.5
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1454.1 1088 68.1
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1453.7 1069 69.4
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1444.5 1072 69.8
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1441.8 978 74.8
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1435.6 1224 63.0
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1435.6 948 75.6
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1426.0 1099 67.0
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1419.4 1072 68.7
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1418.3 998 71.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1411.4 988 71.0
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1409.8 947 74.1
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1407.1 1028 68.3
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1403.7 1003 69.5
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1382.9 1007 68.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1305.0 978 65.5
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1303.1 1092 67.5
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1289.6 969 69.8
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1251.9 881 72.1
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1249.2 1084 62.2
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1249.2 868 72.8
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1240.7 1004 62.4
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1240.3 1037 60.3
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1226.5 1004 61.5
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1159.4 1134 56.3
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1157.5 1006 57.0
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.8e-306 1055.4 1012 53.9
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.8e-300 1036.2 657 77.3
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.5e-294 1016.5 584 90.4
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 8.8e-292 1007.3 1012 51.9
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.8e-289 999.6 1022 52.4
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 8.5e-287 990.7 751 65.5
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 2.2e-279 966.1 997 53.4
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 3.1e-252 875.9 616 71.3
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 7.8e-248 861.3 588 75.7
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.6e-208 730.7 493 74.6
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 2.8e-197 693.3 518 69.7
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 4.5e-195 686.0 472 71.0
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 4.4e-190 669.5 646 57.3
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 8.8e-183 645.2 813 48.0
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.4e-174 616.3 459 66.9
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 4.1e-172 609.8 622 55.8
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 5.2e-167 592.8 410 71.2
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 7.5e-166 589.0 376 79.3
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 5.6e-153 546.2 333 85.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 3.7e-149 533.5 397 67.5
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 1.1e-148 531.9 370 77.0
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 6.2e-128 463.0 306 77.8
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 9.2e-124 449.1 327 68.8
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 4.6e-123 446.8 285 78.6
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.8e-119 434.9 392 61.0
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.3e-112 412.1 294 67.7
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-111 408.7 814 36.6
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.4e-105 386.3 199 90.5
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-91 341.7 241 71.0
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.6e-83 315.5 217 73.3
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 3.9e-82 310.8 292 51.0
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 3.1e-63 248.1 142 85.2
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 5.3e-63 247.3 168 76.8
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.2e-57 229.6 185 64.3
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 8.5e-53 213.4 190 66.3
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.4e-42 179.5 150 58.0
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 1.5e-41 176.0 105 81.0
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 3.9e-37 161.4 215 46.5
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 5.6e-36 157.5 139 55.4
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.1e-34 151.8 169 49.1
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 6.8e-34 150.6 148 52.0
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.7e-32 144.8 112 64.3
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.6e-30 139.4 99 64.6
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 1.7e-29 136.0 114 62.3
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 8.6e-29 133.7 94 68.1
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.2e-27 129.8 120 63.3
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.2e-27 129.8 120 63.3
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 2.8e-27 128.6 90 67.8
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.5e-25 122.9 103 58.3
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-24 119.8 88 65.9
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.3e-21 109.8 73 75.3
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.9e-20 105.9 190 36.3
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.4e-18 99.8 73 65.8
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 1.8e-18 99.4 132 44.7
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.6e-17 95.5 69 66.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.1e-15 88.2 68 64.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.7e-13 82.8 137 40.9
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 6.2e-11 74.3 57 66.7
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 8.1e-11 73.9 67 56.7
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 1.2e-09 70.1 60 60.0
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 3.8e-08 65.1 34 88.2
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.6e-06 59.7 29 82.8
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 2.1e-06 59.3 37 70.3
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 6.0e-06 57.8 44 63.6
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 6.0e-06 57.8 44 63.6
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 6.0e-06 57.8 44 63.6


User provided reference genes

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