Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 4.2e-218 761.1 404 100.0
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 8.2e-214 746.9 404 97.3
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 6.8e-168 594.3 442 78.1
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 5.4e-125 451.8 348 69.3
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 5.5e-109 398.7 404 60.6
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.5e-95 352.4 428 51.9
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 3.2e-93 346.3 393 52.9
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 2.7e-92 343.2 347 57.6
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 5.5e-85 318.9 453 47.2
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 7.0e-72 275.4 356 47.2
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 1.2e-71 274.6 353 46.5
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 4.5e-71 272.7 353 47.6
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 5.9e-71 272.3 337 49.3
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.3e-70 271.2 347 46.4
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 7.5e-66 255.4 344 46.2
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 1.4e-64 251.1 348 45.4
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 5.3e-64 249.2 454 38.5
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 4.5e-63 246.1 357 44.3
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 3.8e-62 243.0 356 43.5
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 3.8e-62 243.0 360 41.7
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 1.5e-61 241.1 357 42.9
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 1.9e-61 240.7 412 40.5
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 9.4e-61 238.4 347 44.7
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 1.6e-60 237.7 449 37.6
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 2.7e-60 236.9 360 42.8
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 8.0e-60 235.3 353 41.6
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 8.0e-60 235.3 357 43.4
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 2.3e-59 233.8 357 41.7
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 3.0e-59 233.4 357 41.7
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 9.8e-58 228.4 357 41.7
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 1.3e-57 228.0 357 41.7
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 2.2e-57 227.3 351 41.9
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 2.2e-57 227.3 354 41.5
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 2.8e-57 226.9 367 39.8
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 2.8e-57 226.9 369 40.1
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 3.7e-57 226.5 367 39.5
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 6.3e-57 225.7 356 40.4
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 6.3e-57 225.7 337 43.9
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 1.4e-56 224.6 360 40.6
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 1.4e-56 224.6 358 41.6
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 3.1e-56 223.4 367 39.2
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 4.1e-56 223.0 502 34.5
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 5.4e-56 222.6 444 40.5
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 9.1e-56 221.9 341 41.9
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 1.2e-55 221.5 345 41.7
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 2.0e-55 220.7 339 42.5
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 3.5e-55 219.9 378 40.5
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 3.5e-55 219.9 337 40.9
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 5.9e-55 219.2 334 42.8
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 7.7e-55 218.8 375 40.5
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 1.3e-54 218.0 351 40.5
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 2.5e-53 213.8 376 38.3
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 2.5e-53 213.8 354 38.1
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 3.3e-53 213.4 359 39.8
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 4.2e-53 213.0 348 40.5
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 9.5e-53 211.8 354 40.4
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 1.6e-52 211.1 435 35.4
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 2.8e-52 210.3 340 39.7
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 4.7e-52 209.5 353 38.5
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 8.0e-52 208.8 353 41.9
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 1.0e-51 208.4 337 39.8
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 1.8e-51 207.6 359 37.9
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 2.3e-51 207.2 352 39.8
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 4.0e-51 206.5 366 35.8
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 6.8e-51 205.7 347 40.6
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 2.6e-50 203.8 347 38.3
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 2.2e-49 200.7 332 37.7
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 3.7e-49 199.9 340 40.0
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 3.7e-49 199.9 351 39.0
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 2.4e-48 197.2 351 38.2
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 5.4e-48 196.1 357 39.5
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 5.4e-48 196.1 366 38.5
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 2.7e-47 193.7 352 37.2
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 5.9e-47 192.6 361 37.1
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 5.9e-47 192.6 357 38.1
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 1.0e-46 191.8 337 39.5
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 2.3e-46 190.7 327 41.3
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 2.3e-46 190.7 353 36.8
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 2.9e-46 190.3 331 38.7
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 1.1e-45 188.3 329 38.9
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 1.5e-45 188.0 330 38.8
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 1.5e-45 188.0 346 38.2
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 4.3e-45 186.4 316 41.1
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 4.3e-45 186.4 329 39.5
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 9.5e-45 185.3 330 38.5
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 2.1e-44 184.1 357 35.9
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 2.8e-44 183.7 317 41.6
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 3.6e-44 183.3 347 36.0
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 4.7e-44 183.0 322 40.1
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 4.7e-44 183.0 308 41.2
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 4.7e-44 183.0 361 36.6
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 6.1e-44 182.6 346 37.3
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 8.0e-44 182.2 334 38.6
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 1.0e-43 181.8 353 37.1
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 1.4e-43 181.4 423 34.5
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 1.4e-43 181.4 286 42.7
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 1.8e-43 181.0 319 38.2
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 6.8e-43 179.1 343 37.6
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 2.0e-42 177.6 355 36.1
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 2.0e-42 177.6 355 36.1
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 2.0e-42 177.6 355 36.1
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 2.0e-42 177.6 344 36.9
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 2.6e-42 177.2 355 37.2
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 3.4e-42 176.8 370 35.7
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 5.8e-42 176.0 363 36.1
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 5.8e-42 176.0 363 36.1
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 5.8e-42 176.0 337 36.2
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 7.5e-42 175.6 346 35.0
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.7e-41 174.5 365 36.7
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 2.9e-41 173.7 352 37.8
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 4.9e-41 172.9 360 38.3
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 1.1e-40 171.8 331 37.8
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 1.4e-40 171.4 317 38.8
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 1.4e-40 171.4 344 36.6
SGA_v2.0_scaffold95G28748 Striga asiatica HOM05D003719 ORTHO05D004116 2.4e-40 170.6 338 40.2
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 4.1e-40 169.9 397 33.5
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 5.4e-40 169.5 315 38.1
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 1.2e-39 168.3 397 33.5
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 2.0e-39 167.5 382 34.6
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 3.5e-39 166.8 332 35.5
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 4.6e-39 166.4 296 39.9
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 6.0e-39 166.0 333 36.3
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 5.0e-38 162.9 330 34.5
vmacro13601 Vaccinium macrocarpon HOM05D003719 ORTHO05D004116 6.6e-38 162.5 335 36.7
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 3.3e-37 160.2 349 35.2
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 7.3e-37 159.1 350 37.7
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 9.5e-37 158.7 357 33.9
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 2.8e-36 157.1 315 36.5
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 3.6e-36 156.8 299 37.8
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 1.2e-34 151.8 331 34.1
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 7.5e-34 149.1 432 33.8
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 3.2e-32 143.7 343 33.5
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 7.0e-32 142.5 336 33.6
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 1.2e-31 141.7 318 35.5
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 3.5e-31 140.2 341 32.0
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 7.8e-31 139.0 320 32.8
Hma1.2p1_0462F.1_g158020 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.1e-29 135.2 297 39.1
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 7.3e-29 132.5 346 30.6
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 2.8e-28 130.6 322 33.5
AUR62014507 Chenopodium quinoa HOM05D003719 ORTHO05D004116 1.3e-25 121.7 282 34.4
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 3.7e-25 120.2 230 38.7
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 8.3e-25 119.0 126 53.2
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 1.4e-24 118.2 316 29.4
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 1.4e-24 118.2 316 29.4
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 2.4e-24 117.5 312 30.8
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 2.4e-24 117.5 312 30.8
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 2.4e-24 117.5 152 47.4
Ca_15283_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 3.2e-24 117.1 256 34.8
Ca_15419_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 3.2e-24 117.1 256 34.8
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 9.2e-24 115.5 155 44.5
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 1.7e-22 111.3 332 31.0
FAN01G0294 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.3e-22 110.9 251 35.5
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 6.2e-20 102.8 316 28.5
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 8.1e-20 102.4 287 32.4
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 1.8e-19 101.3 287 32.1
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.8e-19 101.3 410 26.3
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.2e-18 98.6 70 64.3
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 5.8e-18 96.3 180 36.7
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 5.8e-18 96.3 168 38.1
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 3.8e-17 93.6 266 32.7
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 5.4e-16 89.7 95 43.2
arahy.Tifrunner.gnm1.ann1.E07VAV Arachis hypogaea HOM05D003719 ORTHO05D004116 7.1e-16 89.4 338 29.0
Ah.05g177090 Amaranthus hybridus HOM05D000308 ORTHO05D005285 2.1e-15 87.8 269 30.1
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 2.7e-15 87.4 82 47.6
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 2.7e-15 87.4 97 43.3
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 7.8e-15 85.9 68 60.3
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 1.0e-14 85.5 76 50.0
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.0e-14 85.5 56 60.7
CAN.G1612.6 Capsicum annuum HOM05D003719 ORTHO05D004116 1.7e-14 84.7 79 54.4
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 1.7e-14 84.7 68 58.8
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 5.1e-14 83.2 65 56.9
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 1.1e-13 82.0 84 46.4
CAN.G1260.1 Capsicum annuum HOM05D003719 ORTHO05D004116 4.3e-13 80.1 65 60.0
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 5.6e-13 79.7 70 55.7
PSO349G0045 Papaver somniferum HOM05D003719 ORTHO05D004116 2.1e-12 77.8 282 25.9
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 4.7e-12 76.6 62 54.8
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 1.1e-11 75.5 103 41.7
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 6.9e-11 72.8 107 40.2
CAN.G1612.7 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-10 72.0 69 53.6
Aqoxy7G02797 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 4.4e-10 70.1 73 38.4
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 1.3e-09 68.6 292 26.7
FAN01G0740 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.7e-09 68.2 57 54.4
PSO732G0588 Papaver somniferum HOM05D003719 ORTHO05D004116 1.9e-08 64.7 57 52.6
arahy.Tifrunner.gnm1.ann1.FLAY3S Arachis hypogaea HOM05D003719 ORTHO05D004116 6.0e-07 59.7 63 36.5
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 1.7e-06 58.2 78 33.3
arahy.Tifrunner.gnm1.ann1.SX0HJ3 Arachis hypogaea HOM05D022377 ORTHO05D004116 2.3e-06 57.8 81 33.3


User provided reference genes

Program Settings