Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 4.1e-195 684.5 335 100.0
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 3.4e-189 664.8 336 97.9
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 5.6e-184 647.5 336 94.6
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 3.8e-172 608.2 336 89.0
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.5e-170 601.7 336 87.5
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.9e-169 598.2 336 87.5
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 5.0e-140 501.5 335 74.0
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 2.7e-138 495.7 333 72.1
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 4.6e-138 495.0 336 72.0
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 6.1e-138 494.6 333 71.5
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 2.3e-137 492.7 336 72.0
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.1e-136 490.3 335 70.4
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.4e-134 483.4 334 73.1
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 4.1e-134 481.9 335 70.4
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 3.8e-132 475.3 330 70.3
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 8.5e-132 474.2 339 71.7
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 1.6e-130 469.9 336 70.2
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.6e-130 468.8 332 70.2
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 6.7e-129 464.5 336 70.2
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 2.0e-128 463.0 329 69.9
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 4.4e-128 461.8 332 69.0
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.7e-127 459.9 335 69.6
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 3.7e-127 458.8 331 68.3
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 6.3e-127 458.0 335 69.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.4e-126 456.8 331 68.9
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.8e-126 456.4 337 67.7
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 4.1e-126 455.3 331 68.3
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 5.3e-126 454.9 331 67.7
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 6.9e-126 454.5 331 68.6
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.2e-125 453.8 331 68.0
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.2e-125 453.8 331 68.0
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 5.9e-125 451.4 331 67.4
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 1.0e-124 450.7 337 68.2
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 1.3e-124 450.3 331 67.4
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 2.2e-124 449.5 328 68.6
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 3.8e-124 448.7 328 67.4
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 5.0e-124 448.4 336 66.1
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 6.5e-124 448.0 332 68.7
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 6.5e-124 448.0 336 67.6
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 8.5e-124 447.6 332 68.4
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 1.1e-123 447.2 335 67.2
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 1.1e-123 447.2 335 67.8
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 1.9e-123 446.4 335 66.9
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 5.5e-123 444.9 331 67.4
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 7.2e-123 444.5 336 65.2
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 7.2e-123 444.5 331 68.9
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.2e-122 443.7 336 67.0
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.1e-122 443.0 336 67.0
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 2.1e-122 443.0 330 68.8
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 2.7e-122 442.6 337 67.4
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 4.7e-122 441.8 333 65.8
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 6.7e-121 438.0 359 62.4
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.6e-120 436.0 333 65.2
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 3.3e-120 435.6 330 67.0
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 7.4e-120 434.5 332 66.0
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 9.7e-120 434.1 333 65.8
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.7e-119 433.3 333 64.6
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 3.7e-119 432.2 337 64.1
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 3.7e-119 432.2 337 64.1
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.8e-118 429.9 330 66.4
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 4.1e-118 428.7 343 64.1
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.2e-117 427.2 341 64.2
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 2.0e-117 426.4 346 62.4
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.9e-115 419.9 323 68.7
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 5.5e-115 418.3 380 58.7
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 2.1e-114 416.4 330 63.0
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 2.2e-111 406.4 332 62.7
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 5.3e-110 401.7 331 63.7
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 4.5e-109 398.7 291 68.7
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 2.5e-107 392.9 337 59.6
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 1.2e-106 390.6 331 60.1
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.6e-106 390.2 329 60.8
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.4e-105 387.1 329 60.5
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 2.3e-105 386.3 329 59.9
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 8.8e-105 384.4 332 60.5
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.2e-104 384.0 332 60.5
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.5e-104 383.6 331 58.9
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 2.0e-104 383.3 335 58.8
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 4.4e-104 382.1 329 59.9
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.7e-104 381.7 332 59.3
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 7.5e-104 381.3 329 59.9
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 7.5e-104 381.3 329 59.9
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 5.4e-102 375.2 339 57.5
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 5.4e-102 375.2 336 57.4
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 7.0e-102 374.8 329 56.8
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 7.7e-101 371.3 327 59.6
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 1.3e-100 370.5 335 57.3
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 1.3e-100 370.5 351 55.6
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 3.8e-100 369.0 306 61.4
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 6.5e-100 368.2 337 58.8
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 1.0e-97 360.9 327 56.6
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 8.8e-97 357.8 243 73.7
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.7e-95 353.6 342 54.7
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 7.0e-94 348.2 335 55.8
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 5.7e-88 328.6 308 57.1
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 3.3e-83 312.8 245 66.1
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 8.9e-81 304.7 278 56.8
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.9e-79 298.9 364 47.0
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.1e-75 287.7 338 49.4
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.2e-69 267.7 346 44.8
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 2.7e-69 266.5 180 73.3
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 9.2e-62 241.5 462 35.3
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 6.0e-61 238.8 311 45.3
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 9.0e-57 224.9 147 74.8
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 2.0e-56 223.8 337 40.1
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 2.0e-56 223.8 335 40.3
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 6.4e-55 218.8 163 67.5
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 2.4e-54 216.9 192 58.9
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.4e-38 164.5 177 52.0
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.2e-37 161.4 147 57.1
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.7e-37 160.2 166 51.2
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 8.7e-36 155.2 163 52.1
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.1e-34 150.6 150 54.0
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 5.3e-33 146.0 153 49.0
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 2.2e-26 124.0 74 74.3
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 6.3e-26 122.5 81 69.1
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 2.2e-23 114.0 63 77.8
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 6.3e-18 95.9 132 41.7
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 2.1e-13 80.9 131 42.7
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 6.1e-13 79.3 57 63.2
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 2.0e-11 74.3 58 56.9
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 8.2e-10 68.9 61 65.6
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.4e-09 68.2 69 47.8
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 2.2e-07 60.8 81 43.2
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 2.2e-07 60.8 80 42.5
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 5.5e-06 56.2 33 75.8


User provided reference genes

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