Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1405.6 708 100.0
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1336.2 708 95.2
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1288.5 704 92.8
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1262.7 720 89.6
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1164.4 713 82.6
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1161.7 710 82.8
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1160.2 713 83.3
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1158.3 711 82.1
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1151.7 651 87.6
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1151.7 706 82.9
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1151.0 711 82.7
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1150.6 688 84.3
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1149.0 708 81.6
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1148.7 726 81.3
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1148.7 709 82.8
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1148.3 654 87.0
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1147.9 717 82.7
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1147.9 655 86.7
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1147.5 726 81.1
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1146.0 653 86.8
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1146.0 702 83.0
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1144.8 649 87.7
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1144.4 658 86.8
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1144.4 659 86.5
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1144.0 731 80.8
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1144.0 655 86.1
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1142.9 670 85.2
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1142.9 662 86.0
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1142.1 707 82.0
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1141.3 655 86.3
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1140.6 694 83.9
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1137.5 694 82.4
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1136.3 688 83.7
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1135.9 711 81.3
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1135.2 632 88.9
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1135.2 694 82.7
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1132.5 743 79.3
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1132.1 625 89.0
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1130.9 678 84.1
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1130.5 715 81.4
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1129.8 662 84.7
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1127.5 642 86.9
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1127.1 703 81.2
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1126.7 716 79.7
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1126.7 743 79.1
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1125.5 664 84.2
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1124.8 655 85.2
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1122.8 682 82.6
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1120.5 706 81.3
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1119.0 696 80.9
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1117.1 710 80.3
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1114.0 662 83.1
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 713 79.2
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1105.9 686 80.9
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 734 77.7
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1104.7 705 79.4
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1104.7 651 84.3
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1104.0 691 80.6
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1103.6 692 80.3
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 679 81.4
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 639 85.1
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1099.3 691 80.2
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1099.3 691 80.2
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1099.3 713 79.0
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1097.4 651 83.6
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1096.3 722 78.7
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 634 83.9
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 632 84.0
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1091.3 655 81.7
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1087.8 758 74.1
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1087.8 758 74.1
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1086.6 689 80.1
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1084.7 653 83.0
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1083.2 700 78.9
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 0.0e+00 1078.9 792 72.2
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1075.5 710 78.2
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 1.5e-311 1072.4 708 79.4
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.1e-309 1066.2 861 66.2
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 1.9e-306 1055.4 708 77.4
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.3e-304 1049.3 530 99.2
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.2e-302 1042.0 741 74.8
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.4e-301 1039.3 629 82.8
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 1.6e-297 1025.8 664 79.8
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.5e-295 1019.2 691 73.8
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 2.4e-293 1011.9 793 69.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 4.5e-292 1007.7 693 72.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.7e-283 979.2 551 87.3
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 5.5e-282 974.2 629 75.8
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 8.0e-281 970.3 710 72.7
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.6e-268 929.5 509 90.4
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 2.7e-268 928.7 609 74.7
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.0e-267 926.8 561 84.7
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.2e-267 925.6 543 85.6
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 9.4e-266 920.2 646 72.4
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 7.5e-263 910.6 509 87.8
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 2.4e-261 905.6 560 82.5
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 9.1e-261 903.7 513 85.4
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 2.0e-255 885.9 639 68.4
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.1e-250 870.2 586 75.4
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.2e-249 864.4 598 75.1
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.5e-247 859.8 666 65.2
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.1e-236 822.8 454 88.8
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.4e-224 783.5 612 63.9
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 4.9e-214 748.4 490 76.9
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.7e-198 696.8 352 98.6
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.3e-195 686.4 421 79.1
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 3.1e-192 676.0 409 83.6
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 1.0e-182 644.4 393 80.9
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.1e-173 614.4 401 76.8
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 8.3e-153 545.0 334 81.4
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 9.5e-141 505.0 447 62.0
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 2.0e-130 470.7 597 43.0
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.4e-128 464.5 645 40.3
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 2.5e-109 400.6 348 62.6
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 1.2e-108 398.3 354 60.5
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 3.6e-108 396.7 506 44.1
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 4.0e-107 393.3 677 36.9
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 3.5e-95 353.6 314 60.2
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 4.8e-92 343.2 208 82.2
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.4e-80 305.1 169 89.9
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 2.7e-71 274.2 161 82.0
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.1e-56 225.7 162 66.0
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 5.5e-56 223.4 196 57.7
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 9.4e-56 222.6 170 70.6
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 4.4e-45 187.2 114 84.2
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.7e-44 185.3 252 47.6
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 3.1e-43 181.0 263 43.0
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 4.5e-42 177.2 105 80.0
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 1.1e-40 172.6 182 48.4
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.3e-38 164.9 106 73.6
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 5.4e-35 153.7 112 68.8
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 5.9e-34 150.2 84 88.1
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.3e-33 149.1 139 59.7
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 5.0e-33 147.1 92 78.3
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 5.0e-33 147.1 83 85.5
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 4.7e-31 140.6 71 85.9
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.4e-27 129.0 72 87.5
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 1.6e-26 125.6 76 80.3
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 4.5e-26 124.0 78 76.9
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 8.6e-17 93.2 60 73.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.6e-15 89.0 47 78.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 4.0e-14 84.3 48 77.1
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.4e-13 81.3 82 61.0
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 9.8e-13 79.7 77 55.8


User provided reference genes

Program Settings