Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 7.5e-113 411.0 256 100.0
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.1e-51 206.8 210 56.7
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 2.1e-51 206.8 210 56.7
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 3.4e-49 199.5 209 55.0
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 3.4e-49 199.5 209 55.0
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 4.5e-49 199.1 209 55.5
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 3.4e-41 172.9 101 85.1
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 1.0e-40 171.4 209 47.8
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 1.3e-40 171.0 209 46.9
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 3.8e-40 169.5 209 49.3
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 8.4e-40 168.3 209 46.9
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.4e-39 167.5 209 48.3
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 1.4e-39 167.5 209 48.3
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 1.4e-39 167.5 209 48.3
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 1.4e-39 167.5 209 48.3
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 1.9e-39 167.2 216 48.6
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 1.9e-39 167.2 209 46.9
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 2.5e-39 166.8 209 48.3
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.5e-39 166.8 205 49.8
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 3.2e-39 166.4 206 46.6
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 3.2e-39 166.4 209 46.9
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 4.2e-39 166.0 208 48.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 4.2e-39 166.0 208 48.6
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 4.2e-39 166.0 208 48.6
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 4.2e-39 166.0 208 48.6
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 7.1e-39 165.2 205 46.3
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 7.1e-39 165.2 208 48.6
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 7.1e-39 165.2 208 48.6
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 9.3e-39 164.9 197 48.7
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.3e-39 164.9 209 48.3
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 1.6e-38 164.1 197 48.2
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 1.6e-38 164.1 197 48.2
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 1.6e-38 164.1 197 48.2
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 1.6e-38 164.1 209 47.4
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 1.6e-38 164.1 208 45.7
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 2.7e-38 163.3 190 50.5
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 2.7e-38 163.3 197 48.2
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 2.7e-38 163.3 197 47.7
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 2.7e-38 163.3 210 47.6
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 2.7e-38 163.3 197 47.2
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.7e-38 163.3 208 48.1
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 3.5e-38 162.9 204 45.6
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 3.5e-38 162.9 197 48.2
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 3.5e-38 162.9 209 48.3
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 4.6e-38 162.5 210 47.1
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 4.6e-38 162.5 210 47.1
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 6.0e-38 162.2 208 46.6
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 6.0e-38 162.2 197 49.2
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 1.0e-37 161.4 210 45.7
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 1.0e-37 161.4 197 47.2
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 1.0e-37 161.4 208 44.7
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 1.3e-37 161.0 209 46.9
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.3e-37 161.0 197 46.2
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 1.3e-37 161.0 210 46.7
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 1.3e-37 161.0 210 46.2
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 1.3e-37 161.0 215 47.0
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.3e-37 161.0 209 45.9
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 1.8e-37 160.6 209 46.9
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 1.8e-37 160.6 197 46.2
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 5.1e-37 159.1 206 47.1
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 6.7e-37 158.7 209 46.4
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 6.7e-37 158.7 202 48.0
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 6.7e-37 158.7 202 48.0
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 6.7e-37 158.7 210 46.2
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 6.7e-37 158.7 210 45.7
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 1.9e-36 157.1 210 45.7
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 2.5e-36 156.8 210 44.8
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 2.5e-36 156.8 210 47.1
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 9.6e-36 154.8 209 46.4
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.6e-35 154.1 211 45.5
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 2.1e-35 153.7 207 45.4
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 2.8e-35 153.3 232 42.7
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 3.7e-35 152.9 210 44.8
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 4.8e-35 152.5 209 45.5
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 4.8e-35 152.5 200 44.5
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 1.1e-34 151.4 147 57.1
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 1.4e-34 151.0 205 45.4
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 1.4e-34 151.0 212 44.3
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 2.4e-34 150.2 212 44.3
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 5.3e-34 149.1 222 44.1
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 2.6e-33 146.7 209 42.1
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 2.6e-33 146.7 210 44.8
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 3.4e-33 146.4 210 41.9
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 3.4e-33 146.4 209 42.6
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 7.6e-33 145.2 190 45.3
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 1.0e-32 144.8 119 68.9
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 5.0e-32 142.5 187 46.5
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 5.0e-32 142.5 186 48.9
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 6.5e-32 142.1 209 42.1
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 1.9e-31 140.6 191 44.5
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 2.5e-31 140.2 210 43.3
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 5.5e-31 139.0 186 47.8
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 1.2e-30 137.9 189 44.4
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.5e-28 131.0 209 40.2
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 5.0e-24 115.9 167 43.7
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 2.2e-19 100.5 210 34.3
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 6.3e-19 99.0 209 34.0
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 4.1e-18 96.3 114 46.5
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.2e-17 94.7 94 55.3
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.0e-17 94.0 102 48.0
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.0e-17 94.0 78 64.1
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 4.5e-17 92.8 204 32.8
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 7.7e-17 92.0 90 53.3
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.7e-17 92.0 72 66.7
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.8e-13 80.9 49 79.6
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.1e-10 71.6 67 62.7
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 2.4e-10 70.5 145 36.6
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 1.7e-08 64.3 59 52.5


User provided reference genes

Program Settings