Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.6e-122 442.2 243 100.0
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.7e-119 432.2 242 97.9
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.2e-114 416.8 243 95.1
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 4.6e-111 404.8 243 91.8
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.8e-108 395.6 243 86.0
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.6e-108 395.2 243 89.3
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.8e-107 392.9 243 88.1
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.0e-102 377.1 243 85.2
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.3e-101 371.7 243 84.4
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.1e-100 369.4 243 82.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.2e-100 367.9 243 82.3
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.4e-99 365.9 243 79.0
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.6e-98 362.5 242 83.1
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 7.8e-95 350.9 243 81.1
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.7e-94 349.7 204 87.7
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 3.9e-94 348.6 243 77.4
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 8.7e-94 347.4 243 79.8
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 8.7e-94 347.4 206 85.0
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.5e-93 346.7 245 74.7
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.5e-93 346.7 243 79.4
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 3.3e-93 345.5 242 79.8
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 7.3e-93 344.4 243 74.1
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 9.6e-93 344.0 242 74.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 2.1e-92 342.8 243 78.2
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.1e-92 342.8 243 78.6
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 4.8e-92 341.7 243 73.3
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 8.1e-92 340.9 244 71.7
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 3.1e-91 339.0 209 80.9
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.1e-91 339.0 243 71.6
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.0e-91 338.6 244 77.9
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 5.3e-91 338.2 242 78.5
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 1.2e-90 337.0 243 77.4
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.2e-90 337.0 238 73.9
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 2.0e-90 336.3 227 83.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 2.6e-90 335.9 243 77.0
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.6e-90 335.9 243 77.4
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.4e-90 335.5 244 71.7
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 4.5e-90 335.1 243 77.0
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 4.5e-90 335.1 240 72.9
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 9.9e-90 334.0 244 71.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 9.9e-90 334.0 244 71.3
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 77.3
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.2e-89 332.8 243 77.8
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 76.4
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.9e-89 332.4 243 76.1
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 3.8e-89 332.0 242 78.1
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.8e-89 332.0 244 71.3
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 6.4e-89 331.3 243 72.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 6.4e-89 331.3 243 74.1
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.1e-88 330.5 203 81.8
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.4e-88 330.1 243 76.1
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.4e-88 330.1 242 71.1
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.9e-88 329.7 243 71.6
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.9e-88 329.7 244 70.9
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.9e-88 329.7 199 83.9
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.4e-88 329.3 246 69.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.4e-88 329.3 243 77.0
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 74.8
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 2.4e-88 329.3 242 74.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 4.2e-88 328.6 242 74.8
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 5.4e-88 328.2 253 71.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 75.2
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 7.1e-88 327.8 206 81.1
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 9.3e-88 327.4 240 71.7
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.2e-87 327.0 243 75.7
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.6e-87 326.6 243 76.1
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.1e-87 326.2 227 81.5
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 4.6e-87 325.1 243 70.0
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 4.6e-87 325.1 243 74.5
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 6.0e-87 324.7 207 79.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 7.9e-87 324.3 243 74.5
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 7.9e-87 324.3 242 74.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 74.4
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.8e-86 323.2 243 75.7
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 3.9e-86 322.0 242 74.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 3.9e-86 322.0 242 74.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 5.1e-86 321.6 242 74.0
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.1e-86 321.6 243 75.7
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 8.7e-86 320.9 232 72.0
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.1e-85 320.5 208 79.3
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.9e-85 319.7 206 79.6
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 2.5e-85 319.3 199 81.9
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 3.3e-85 318.9 243 73.7
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.3e-85 318.9 242 70.7
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 7.4e-85 317.8 242 71.5
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.8e-84 315.8 204 79.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.7e-84 315.5 248 69.0
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 8.1e-84 314.3 244 72.5
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 8.1e-84 314.3 243 73.7
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 2.4e-83 312.8 202 80.2
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.1e-83 312.4 245 68.6
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 3.1e-83 312.4 243 71.6
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.3e-83 311.6 243 72.4
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.0e-82 309.7 244 72.1
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.0e-82 309.7 244 67.6
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.0e-82 309.7 245 68.2
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 3.4e-82 308.9 246 71.5
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 3.4e-82 308.9 204 76.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 4.5e-82 308.5 216 82.9
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.6e-82 307.8 245 67.3
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.3e-81 307.0 226 74.3
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.7e-81 306.6 244 68.4
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.2e-81 306.2 244 68.4
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 2.2e-81 306.2 209 75.6
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.9e-81 305.8 193 80.3
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.9e-81 305.8 243 70.0
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.8e-81 305.4 245 67.3
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 8.4e-81 304.3 204 75.5
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.5e-80 302.8 245 67.3
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 7.1e-80 301.2 243 68.7
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.2e-79 300.4 244 69.3
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.6e-79 300.1 245 65.7
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.5e-79 298.9 226 71.2
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.0e-78 297.4 205 76.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.8e-78 296.6 215 71.6
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.8e-78 296.6 215 71.6
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.8e-78 296.6 243 67.9
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 8.7e-78 294.3 215 71.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 8.7e-78 294.3 215 71.2
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.1e-75 285.8 183 78.1
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.5e-71 272.3 209 66.5
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.9e-70 268.9 195 71.3
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.7e-69 265.0 176 73.3
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 9.7e-69 264.2 196 68.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 3.9e-62 242.3 196 62.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 6.3e-60 235.0 157 75.2
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.8e-59 233.4 213 62.0
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.7e-55 219.5 187 63.1
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 7.9e-55 218.0 213 56.8
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 2.0e-53 213.4 171 69.6
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.5e-48 196.4 133 72.9
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 8.8e-46 188.0 243 50.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.3e-45 186.0 111 78.4
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.1e-40 171.0 176 52.3
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 5.7e-37 158.7 173 50.3
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 5.3e-35 152.1 105 69.5
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 7.5e-29 131.7 188 41.0
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.8e-28 129.8 91 89.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 3.1e-27 126.3 86 68.6
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 9.1e-27 124.8 98 66.3
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.4e-19 100.9 91 63.7
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.5e-16 90.9 189 30.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.4e-14 84.3 54 74.1
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.4e-11 73.6 188 28.7
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 3.9e-09 66.2 80 52.5
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 2.1e-07 60.5 83 44.6
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.0e-06 56.2 63 54.0


User provided reference genes

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