Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.8e-150 535.8 255 100.0
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 2.0e-149 532.3 255 99.6
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.2e-140 502.3 255 93.3
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 5.1e-137 491.1 255 91.4
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-131 473.4 247 90.3
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.9e-131 472.6 251 88.8
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 6.3e-119 431.0 249 78.7
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 5.5e-115 417.9 249 74.7
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.6e-114 416.4 249 74.3
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.0e-113 413.7 249 75.1
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.3e-112 408.3 251 72.5
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.7e-111 406.4 251 73.7
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.4e-110 402.5 249 73.9
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.1e-110 402.1 249 73.5
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 3.1e-110 402.1 248 75.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.1e-110 401.7 249 73.9
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 5.3e-110 401.4 248 73.4
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 5.3e-110 401.4 249 73.9
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 5.3e-110 401.4 249 73.9
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 9.1e-110 400.6 249 73.1
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.2e-109 400.2 248 73.0
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.5e-109 399.8 249 73.1
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 5.9e-109 397.9 249 71.9
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 5.9e-109 397.9 252 71.8
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 7.7e-109 397.5 248 73.0
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.0e-108 397.1 250 72.0
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 5.0e-108 394.8 249 73.9
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 5.0e-108 394.8 274 67.5
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 6.5e-108 394.4 248 73.0
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.1e-107 393.7 253 71.5
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 5.5e-107 391.3 251 71.3
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 5.5e-107 391.3 247 73.3
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 5.5e-107 391.3 249 71.1
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 7.2e-107 391.0 255 72.5
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.1e-106 389.4 249 69.9
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.8e-105 386.3 247 71.3
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.8e-105 386.3 248 72.6
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 5.1e-105 384.8 251 68.1
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.1e-104 383.6 252 69.0
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.1e-104 383.6 251 68.1
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 2.0e-104 382.9 248 69.4
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.0e-104 382.9 252 69.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 2.6e-104 382.5 252 69.4
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 3.3e-104 382.1 248 70.2
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 9.7e-104 380.6 253 69.6
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 2.2e-103 379.4 219 76.3
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.1e-102 377.1 248 69.4
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.4e-102 376.7 252 68.3
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 3.1e-102 375.6 252 67.5
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 9.1e-102 374.0 251 64.9
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.7e-100 369.8 252 67.5
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 6.5e-100 367.9 252 66.7
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 8.5e-100 367.5 246 68.7
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.1e-99 367.1 248 68.1
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 3.2e-99 365.5 249 68.3
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 4.2e-99 365.2 248 67.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 9.4e-99 364.0 247 68.4
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 3.6e-98 362.1 250 66.4
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 6.1e-98 361.3 248 67.7
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 8.0e-98 360.9 248 67.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.0e-97 360.5 247 66.4
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.0e-97 360.5 248 67.7
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.0e-97 359.0 251 66.5
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 3.9e-97 358.6 248 62.9
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 8.8e-97 357.5 248 63.3
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.0e-96 356.3 247 66.4
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 5.7e-96 354.8 248 63.7
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 7.4e-96 354.4 248 64.1
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 9.7e-96 354.0 247 67.6
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.1e-94 350.5 248 62.1
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 7.0e-94 347.8 248 62.1
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-93 347.1 248 61.7
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 1.6e-93 346.7 248 62.1
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 2.0e-93 346.3 248 61.7
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 2.6e-93 345.9 248 61.7
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.0e-92 344.0 248 61.3
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.2e-92 342.8 248 62.1
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 5.0e-92 341.7 267 62.2
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 6.5e-92 341.3 248 60.5
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 6.5e-92 341.3 248 60.9
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.9e-91 339.7 248 60.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 9.4e-91 337.4 247 60.3
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 6.8e-89 331.3 220 66.4
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.7e-87 326.6 251 61.4
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.0e-85 319.7 203 72.4
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.4e-83 310.8 189 74.1
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.2e-82 310.5 228 60.5
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 3.6e-82 308.9 222 61.7
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.2e-79 299.7 220 62.7
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-77 293.9 160 85.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 2.7e-77 292.7 245 54.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.3e-76 290.4 216 61.6
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.7e-76 290.0 248 58.1
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 2.3e-76 289.7 247 53.8
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.8e-76 288.9 252 55.6
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.1e-75 287.3 189 67.2
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.1e-75 287.3 252 55.6
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 3.3e-75 285.8 190 71.1
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.6e-74 283.5 246 52.0
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 4.0e-73 278.9 247 51.8
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 6.8e-73 278.1 161 76.4
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.4e-70 270.4 243 55.1
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.2e-69 267.3 174 69.0
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 2.7e-69 266.2 245 50.6
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 4.7e-66 255.4 249 49.8
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 8.9e-65 251.1 154 72.1
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.4e-63 245.0 214 53.7
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.5e-59 233.0 244 51.2
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.6e-59 231.9 183 60.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.8e-58 229.6 243 50.2
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.1e-57 227.6 157 68.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 3.4e-56 222.6 148 68.2
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.7e-47 193.7 124 79.0
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 8.3e-47 191.4 229 48.5
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.4e-46 188.7 200 51.0
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.5e-43 180.6 216 37.5
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.6e-42 177.2 195 49.2
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.4e-41 174.1 127 60.6
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.8e-41 173.7 114 67.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.7e-39 167.2 148 55.4
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.1e-33 147.9 127 56.7
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 9.9e-32 141.4 100 66.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.7e-31 140.6 211 37.9
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-30 137.5 100 65.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 3.0e-28 129.8 75 74.7
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 3.1e-25 119.8 95 60.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.4e-22 109.0 64 76.6
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 5.1e-20 102.4 76 57.9
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.2e-16 91.3 64 70.3
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.5e-16 90.9 77 61.0
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.5e-15 85.5 85 52.9


User provided reference genes

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