Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g010610 Solanum pennellii HOM05D003266 ORTHO05D003718 3.2e-59 231.9 148 100.0
Solyc03g120470.4 Solanum lycopersicum HOM05D003266 ORTHO05D003718 1.8e-54 216.1 146 93.8
PGSC0003DMG401002553 Solanum tuberosum HOM05D003266 ORTHO05D003718 8.0e-50 200.7 146 81.5
Nitab4.5_0002424g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 7.0e-30 134.4 150 56.7
Nitab4.5_0013558g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.3e-28 130.2 154 56.5
CAN.G438.41 Capsicum annuum HOM05D003266 ORTHO05D003718 9.2e-22 107.5 154 69.5
Peaxi162Scf00015g00241 Petunia axillaris HOM05D003266 ORTHO05D003718 6.6e-20 101.3 141 56.0
Dinv38001 Davidia involucrata HOM05D003266 ORTHO05D003718 2.8e-18 95.9 146 46.6
Hma1.2p1_1689F.1_g297710 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 4.0e-17 92.0 150 44.7
CSS0002644 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 7.1e-14 81.3 151 41.7
MSTRG.22654 Avicennia marina HOM05D003266 ORTHO05D003718 1.6e-13 80.1 169 33.7
Cfa002112 Carpinus fangiana HOM05D003266 ORTHO05D003718 7.8e-13 77.8 154 41.6
QL05p021182 Quercus lobata HOM05D003266 ORTHO05D003718 1.0e-12 77.4 146 41.1
Prupe.3G063700 Prunus persica HOM05D003266 ORTHO05D003718 2.3e-12 76.3 147 39.5
vmacro18872 Vaccinium macrocarpon HOM05D003266 ORTHO05D003718 3.0e-12 75.9 147 43.5
SGA_v2.0_scaffold69G23353 Striga asiatica HOM05D003266 ORTHO05D003718 6.6e-12 74.7 150 36.7
Haze_16335 Corylus avellana HOM05D003266 ORTHO05D003718 8.6e-12 74.3 154 40.9
TAR626G0182 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.1e-11 73.9 148 40.5
ClCG09G001800 Citrullus lanatus HOM05D003266 ORTHO05D003718 2.5e-11 72.8 43 81.4
Lalb_Chr24g0396021 Lupinus albus HOM05D003266 ORTHO05D003718 2.5e-11 72.8 147 41.5
CsaV3_7G033540 Cucumis sativus L. HOM05D003266 ORTHO05D003718 3.3e-11 72.4 43 81.4
unitig_748.g8094 Utricularia gibba HOM05D003266 ORTHO05D003718 3.3e-11 72.4 146 35.6
MELO3C024265.2 Cucumis melo HOM05D003266 ORTHO05D003718 5.6e-11 71.6 41 82.9
Lj5C56T10 Lonicera japonica HOM05D003266 ORTHO05D003718 9.5e-11 70.9 43 88.4
TAR636G2661 Trochodendron aralioides HOM05D003266 ORTHO05D003718 9.5e-11 70.9 148 40.5
Cc04_g02800 Coffea canephora HOM05D003266 ORTHO05D003718 1.2e-10 70.5 173 32.9
MD03G1197500 Malus domestica HOM05D003266 ORTHO05D003718 1.2e-10 70.5 146 34.2
Psat5g297200 Pisum sativum HOM05D003266 ORTHO05D003718 1.2e-10 70.5 39 87.2
Sed0017993 Sechium edule HOM05D003266 ORTHO05D003718 1.2e-10 70.5 149 39.6
Cpa.g.sc34.31 Carica papaya HOM05D003266 ORTHO05D003718 1.6e-10 70.1 39 84.6
HanXRQChr09g0275951 Helianthus annuus HOM05D003266 ORTHO05D003718 2.1e-10 69.7 155 39.4
Lj3g0015133 Lotus japonicus HOM05D003266 ORTHO05D003718 2.1e-10 69.7 43 74.4
Sed0020980 Sechium edule HOM05D003266 ORTHO05D003718 2.1e-10 69.7 41 80.5
TPR.G37248 Trifolium pratense HOM05D003266 ORTHO05D003718 2.1e-10 69.7 39 84.6
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 2.8e-10 69.3 38 84.2
AUR62031873 Chenopodium quinoa HOM05D003266 ORTHO05D003718 3.6e-10 68.9 148 39.2
arahy.Tifrunner.gnm1.ann1.X5C2Q6 Arachis hypogaea HOM05D003266 ORTHO05D003718 4.7e-10 68.6 43 72.1
Oeu040356.1 Olea europaea HOM05D003266 ORTHO05D003718 4.7e-10 68.6 41 78.0
SalBow2G0145 Salvia bowleyana HOM05D003266 ORTHO05D003718 4.7e-10 68.6 158 37.3
Ca_01149_v3 Cicer arietinum L. HOM05D003266 ORTHO05D003718 6.2e-10 68.2 45 71.1
Medtr2g101390 Medicago truncatula HOM05D003266 ORTHO05D003718 8.1e-10 67.8 41 80.5
Thecc.06G095700 Theobroma cacao HOM05D003266 ORTHO05D003718 1.4e-09 67.0 43 74.4
arahy.Tifrunner.gnm1.ann1.MP8KIY Arachis hypogaea HOM05D003266 ORTHO05D003718 1.8e-09 66.6 43 69.8
CiPaw.01G233800 Carya illinoinensis HOM05D003266 ORTHO05D003718 1.8e-09 66.6 149 40.3
Glyma.13G356200 Glycine max HOM05D003266 ORTHO05D003718 1.8e-09 66.6 42 76.2
Gohir.A10G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.8e-09 66.6 43 72.1
Lalb_Chr22g0351451 Lupinus albus HOM05D003266 ORTHO05D003718 1.8e-09 66.6 40 75.0
GSVIVG01017040001 Vitis vinifera HOM05D003266 ORTHO05D003718 1.8e-09 66.6 41 82.9
Duzib160G0509 Durio zibethinus HOM05D003266 ORTHO05D003718 2.4e-09 66.2 43 72.1
Migut.I00926 Erythranthe guttata HOM05D003266 ORTHO05D003718 3.1e-09 65.9 167 41.3
Ah.01g021810 Amaranthus hybridus HOM05D003266 ORTHO05D003718 4.0e-09 65.5 42 81.0
CANSAT80G0796 Cannabis sativa HOM05D003266 ORTHO05D003718 4.0e-09 65.5 147 36.7
PSO210G6470 Papaver somniferum HOM05D003266 ORTHO05D003718 4.0e-09 65.5 42 81.0
RcHm_v2.0_Chr2g0139581 Rosa chinensis HOM05D003266 ORTHO05D003718 4.0e-09 65.5 42 76.2
Glyma.15G017900 Glycine max HOM05D003266 ORTHO05D003718 5.2e-09 65.1 42 73.8
Manes.11G036300 Manihot esculenta HOM05D003266 ORTHO05D003718 5.2e-09 65.1 39 76.9
Aa31LG8G3410 Aethionema arabicum HOM05D003266 ORTHO05D003718 6.8e-09 64.7 38 78.9
Lsat_1_v5_gn_4_100861 Lactuca sativa HOM05D003266 ORTHO05D003718 6.8e-09 64.7 163 36.2
Rhsim08G0225600 Rhododendron simsii HOM05D003266 ORTHO05D003718 6.8e-09 64.7 149 37.6
Sc12g0009560 Simmondsia chinensis HOM05D003266 ORTHO05D003718 6.8e-09 64.7 42 81.0
Sc12g0009670 Simmondsia chinensis HOM05D003266 ORTHO05D003718 6.8e-09 64.7 42 81.0
Gohir.D10G068200 Gossypium hirsutum HOM05D003266 ORTHO05D003718 8.9e-09 64.3 43 69.8
Gorai.011G072800 Gossypium raimondii HOM05D003266 ORTHO05D003718 8.9e-09 64.3 43 69.8
CSS0038057 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 1.2e-08 63.9 165 36.4
Ciclev10024815m.g Citrus clementina HOM05D003266 ORTHO05D003718 1.2e-08 63.9 41 73.2
Hund00661 Selenicereus undatus HOM05D003266 ORTHO05D003718 1.2e-08 63.9 148 39.9
EL10Ac9g22044 Beta vulgaris HOM05D003266 ORTHO05D003718 1.5e-08 63.5 42 78.6
Phvul.005G170100 Phaseolus vulgaris HOM05D003266 ORTHO05D003718 1.5e-08 63.5 38 78.9
TAR383G0500 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.5e-08 63.5 42 78.6
Atru.chr1.3468 Acer truncatum HOM05D003266 ORTHO05D003718 2.0e-08 63.2 43 69.8
AUR62032707 Chenopodium quinoa HOM05D003266 ORTHO05D003718 2.0e-08 63.2 148 37.8
COL.COLO4_30471 Corchorus olitorius HOM05D003266 ORTHO05D003718 2.0e-08 63.2 39 76.9
PSO210G4271 Papaver somniferum HOM05D003266 ORTHO05D003718 2.0e-08 63.2 42 78.6
Potri.001G186900 Populus trichocarpa HOM05D003266 ORTHO05D003718 2.0e-08 63.2 42 71.4
Actinidia21698 Actinidia chinensis HOM05D003266 ORTHO05D003718 4.4e-08 62.0 42 71.4
Actinidia32711 Actinidia chinensis HOM05D003266 ORTHO05D003718 4.4e-08 62.0 42 71.4
THA.LOC104817970 Tarenaya hassleriana HOM05D003266 ORTHO05D003718 4.4e-08 62.0 41 73.2
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 9.9e-08 60.8 42 73.8
FAN02G0192 Fragaria x ananassa HOM05D003266 ORTHO05D003718 1.3e-07 60.5 152 36.2
Eucgr.J02950 Eucalyptus grandis HOM05D003266 ORTHO05D003718 2.2e-07 59.7 42 66.7
TWI12G1119 Tripterygium wilfordii HOM05D003266 ORTHO05D003718 2.2e-07 59.7 42 66.7
Sabra01G0153400 Salix brachista HOM05D003266 ORTHO05D003718 2.9e-07 59.3 42 69.0
Sp3g14630 Schrenkiella parvula HOM05D003266 ORTHO05D003718 2.9e-07 59.3 43 65.1
CARHR091470 Cardamine hirsuta HOM05D003266 ORTHO05D003718 6.4e-07 58.2 43 65.1
Thhalv10019999m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 6.4e-07 58.2 43 62.8
CDE05G0524 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 8.4e-07 57.8 42 71.4
BcaB06g25715 Brassica carinata HOM05D003266 ORTHO05D003718 1.1e-06 57.4 43 62.8
BcaC05g28901 Brassica carinata HOM05D003266 ORTHO05D003718 1.1e-06 57.4 43 62.8
A05p33260 Brassica napus HOM05D003266 ORTHO05D003718 1.1e-06 57.4 43 62.8
C05p50250 Brassica napus HOM05D003266 ORTHO05D003718 1.1e-06 57.4 43 62.8
BolC5t33776H Brassica oleracea HOM05D003266 ORTHO05D003718 1.1e-06 57.4 43 62.8
BraA05t22151Z Brassica rapa HOM05D003266 ORTHO05D003718 1.1e-06 57.4 43 62.8
AL3G29000 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 1.9e-06 56.6 43 62.8
AT3G16260 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 1.9e-06 56.6 43 62.8
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 1.9e-06 56.6 42 69.0
DCAR_026337 Daucus carota HOM05D003266 ORTHO05D003718 3.2e-06 55.8 42 69.0
FvH4_6g31990 Fragaria vesca HOM05D003266 ORTHO05D003718 4.2e-06 55.5 153 34.6
ECA232G0114 Erigeron canadensis HOM05D003266 ORTHO05D003718 5.4e-06 55.1 38 71.1
FAN14G1864 Fragaria x ananassa HOM05D003266 ORTHO05D003718 7.1e-06 54.7 153 34.6
Aa31LG10G2720 Aethionema arabicum HOM05D003266 ORTHO05D003718 9.2e-06 54.3 43 58.1
CSS0038683 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 9.2e-06 54.3 42 66.7
Carub.0003s1601 Capsella rubella HOM05D003266 ORTHO05D003718 9.2e-06 54.3 43 60.5
CARHR042320 Cardamine hirsuta HOM05D003266 ORTHO05D003718 9.2e-06 54.3 43 62.8


User provided reference genes

Program Settings