Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g007320 Solanum pennellii HOM05D003098 ORTHO05D003634 2.7e-118 428.7 218 100.0
Sopen07g029980 Solanum pennellii HOM05D003098 ORTHO05D003634 1.9e-116 422.5 215 100.0
Solyc07g056630.3 Solanum lycopersicum HOM05D003098 ORTHO05D003634 4.7e-115 417.9 215 99.1
CAN.G1003.6 Capsicum annuum HOM05D003098 ORTHO05D003634 5.0e-101 371.3 218 90.4
Nitab4.5_0005080g0040 Nicotiana tabacum HOM05D003098 ORTHO05D003634 3.1e-98 362.1 216 88.0
Peaxi162Scf00111g00826 Petunia axillaris HOM05D003098 ORTHO05D003634 1.2e-91 340.1 215 84.2
Nitab4.5_0002495g0010 Nicotiana tabacum HOM05D003098 ORTHO05D003634 4.0e-90 335.1 219 82.6
Dinv13310 Davidia involucrata HOM05D003098 ORTHO05D003634 1.2e-54 217.2 222 59.9
SalBow8G0445 Salvia bowleyana HOM05D003098 ORTHO05D003634 3.3e-52 209.1 221 57.9
Cc05_g10240 Coffea canephora HOM05D003098 ORTHO05D003634 2.4e-50 203.0 219 58.0
Lj1A810G57 Lonicera japonica HOM05D003098 ORTHO05D003634 5.8e-49 198.4 219 55.7
SalBow8G0143 Salvia bowleyana HOM05D003098 ORTHO05D003634 1.0e-48 197.6 216 56.9
Oeu009883.1 Olea europaea HOM05D003098 ORTHO05D003634 2.5e-47 193.0 216 56.9
Eucgr.F03204 Eucalyptus grandis HOM05D003098 ORTHO05D003634 5.5e-47 191.8 220 54.5
Ciclev10020251m.g Citrus clementina HOM05D003098 ORTHO05D003634 4.6e-46 188.7 231 51.9
COL.COLO4_17417 Corchorus olitorius HOM05D003098 ORTHO05D003634 2.3e-45 186.4 219 52.5
MSTRG.15009 Avicennia marina HOM05D003098 ORTHO05D003634 3.0e-45 186.0 219 53.0
QL04p070282 Quercus lobata HOM05D003098 ORTHO05D003634 3.9e-45 185.7 204 56.9
Rhsim06G0184800 Rhododendron simsii HOM05D003098 ORTHO05D003634 6.7e-45 184.9 221 55.2
CiPaw.11G068300 Carya illinoinensis HOM05D003098 ORTHO05D003634 1.1e-44 184.1 214 56.1
CANSAT94G0015 Cannabis sativa HOM05D003098 ORTHO05D003634 1.5e-44 183.7 219 52.1
Potri.001G378000 Populus trichocarpa HOM05D003098 ORTHO05D003634 1.9e-44 183.3 222 50.9
TAR627G0095 Trochodendron aralioides HOM05D003098 ORTHO05D003634 9.6e-44 181.0 214 53.3
Atru.chr2.1895 Acer truncatum HOM05D003098 ORTHO05D003634 1.3e-43 180.6 220 52.3
DCAR_021056 Daucus carota HOM05D003098 ORTHO05D003634 2.1e-43 179.9 225 55.1
Hma1.2p1_1456F.1_g284580 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 6.3e-43 178.3 219 53.9
Duzib268G0819 Durio zibethinus HOM05D003098 ORTHO05D003634 8.2e-43 177.9 220 50.9
Hma1.2p1_0325F.1_g125950 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 8.2e-43 177.9 219 51.6
Duzib187G1141 Durio zibethinus HOM05D003098 ORTHO05D003634 1.4e-42 177.2 217 49.8
vmacro12016 Vaccinium macrocarpon HOM05D003098 ORTHO05D003634 1.8e-42 176.8 220 55.0
Prupe.4G148900 Prunus persica HOM05D003098 ORTHO05D003634 3.1e-42 176.0 219 53.4
TAR629G0752 Trochodendron aralioides HOM05D003098 ORTHO05D003634 5.3e-42 175.3 217 53.5
Thecc.07G146500 Theobroma cacao HOM05D003098 ORTHO05D003634 9.0e-42 174.5 219 51.1
Lalb_Chr01g0016081 Lupinus albus HOM05D003098 ORTHO05D003634 1.5e-41 173.7 220 50.9
Cfa019454 Carpinus fangiana HOM05D003098 ORTHO05D003634 2.0e-41 173.3 212 54.2
MBI07_g23222_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 3.4e-41 172.6 214 52.3
Ca_03391_v3 Cicer arietinum L. HOM05D003098 ORTHO05D003634 4.5e-41 172.2 223 51.1
Medtr2g070630 Medicago truncatula HOM05D003098 ORTHO05D003634 4.5e-41 172.2 219 49.3
TWI38G0376 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 5.9e-41 171.8 218 50.0
TWI38G1646 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 5.9e-41 171.8 218 50.0
MD10G1195000 Malus domestica HOM05D003098 ORTHO05D003634 7.6e-41 171.4 219 51.1
Psat1g001120 Pisum sativum HOM05D003098 ORTHO05D003634 7.6e-41 171.4 226 50.9
Dinv26666 Davidia involucrata HOM05D003098 ORTHO05D003634 1.0e-40 171.0 220 50.5
Actinidia12840 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.7e-40 170.2 217 53.9
MSTRG.6711 Avicennia marina HOM05D003098 ORTHO05D003634 2.2e-40 169.9 204 52.0
TAR626G1321 Trochodendron aralioides HOM05D003098 ORTHO05D003634 2.2e-40 169.9 217 51.6
Haze_08492 Corylus avellana HOM05D003098 ORTHO05D003634 2.9e-40 169.5 234 50.4
Sabra16G0249000 Salix brachista HOM05D003098 ORTHO05D003634 3.8e-40 169.1 222 51.8
MD05G1208500 Malus domestica HOM05D003098 ORTHO05D003634 5.0e-40 168.7 218 50.9
Manes.15G101000 Manihot esculenta HOM05D003098 ORTHO05D003634 1.1e-39 167.5 228 48.2
Cpa.g.sc77.97 Carica papaya HOM05D003098 ORTHO05D003634 1.4e-39 167.2 222 52.7
Actinidia18845 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.9e-39 166.8 214 53.7
arahy.Tifrunner.gnm1.ann1.A6UZA5 Arachis hypogaea HOM05D003098 ORTHO05D003634 3.2e-39 166.0 218 50.0
arahy.Tifrunner.gnm1.ann1.PZE2NF Arachis hypogaea HOM05D003098 ORTHO05D003634 3.2e-39 166.0 218 50.0
RcHm_v2.0_Chr5g0027751 Rosa chinensis HOM05D003098 ORTHO05D003634 5.5e-39 165.2 219 49.3
Potri.011G096000 Populus trichocarpa HOM05D003098 ORTHO05D003634 1.6e-38 163.7 222 49.5
DCAR_013797 Daucus carota HOM05D003098 ORTHO05D003634 2.7e-38 162.9 217 52.1
CsaV3_4G007810 Cucumis sativus L. HOM05D003098 ORTHO05D003634 6.1e-38 161.8 231 47.2
Glyma.13G259100 Glycine max HOM05D003098 ORTHO05D003634 1.0e-37 161.0 227 48.9
Lj3g0011437 Lotus japonicus HOM05D003098 ORTHO05D003634 1.0e-37 161.0 221 49.8
MELO3C016154.2 Cucumis melo HOM05D003098 ORTHO05D003634 1.3e-37 160.6 231 46.8
Lalb_Chr25g0285391 Lupinus albus HOM05D003098 ORTHO05D003634 1.3e-37 160.6 219 51.6
MBI10_g30422_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 2.3e-37 159.8 217 50.2
Duzib213G0182 Durio zibethinus HOM05D003098 ORTHO05D003634 3.0e-37 159.5 219 47.5
Glyma.15G249000 Glycine max HOM05D003098 ORTHO05D003634 1.1e-36 157.5 223 49.8
Phvul.005G060550 Phaseolus vulgaris HOM05D003098 ORTHO05D003634 1.1e-36 157.5 221 47.5
Gohir.A13G152100 Gossypium hirsutum HOM05D003098 ORTHO05D003634 4.3e-36 155.6 228 46.9
PGR031G0814 Punica granatum HOM05D003098 ORTHO05D003634 5.7e-36 155.2 222 50.9
GSVIVG01038087001 Vitis vinifera HOM05D003098 ORTHO05D003634 2.2e-35 153.3 214 49.5
Aqoxy1G01700 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 6.3e-35 151.8 217 47.5
FvH4_3g16610 Fragaria vesca HOM05D003098 ORTHO05D003634 8.2e-35 151.4 219 46.1
FAN11G1214 Fragaria x ananassa HOM05D003098 ORTHO05D003634 8.2e-35 151.4 219 46.1
FAN16G2875 Fragaria x ananassa HOM05D003098 ORTHO05D003634 1.8e-34 150.2 219 45.7
FAN21G2223 Fragaria x ananassa HOM05D003098 ORTHO05D003634 2.4e-34 149.8 219 45.7
Oeu050692.2 Olea europaea HOM05D003098 ORTHO05D003634 2.4e-34 149.8 216 45.8
Sed0021570 Sechium edule HOM05D003098 ORTHO05D003634 2.4e-34 149.8 228 46.1
FAN25G3533 Fragaria x ananassa HOM05D003098 ORTHO05D003634 3.1e-34 149.4 219 45.7
Nn3g20785 Nelumbo nucifera HOM05D003098 ORTHO05D003634 3.1e-34 149.4 217 47.5
Actinidia35176 Actinidia chinensis HOM05D003098 ORTHO05D003634 4.1e-34 149.1 212 50.9
ClCG07G010480 Citrullus lanatus HOM05D003098 ORTHO05D003634 1.5e-33 147.1 232 44.8
PSO541G6535 Papaver somniferum HOM05D003098 ORTHO05D003634 2.0e-33 146.7 232 47.8
PSO675G2036 Papaver somniferum HOM05D003098 ORTHO05D003634 2.6e-33 146.4 224 49.1
Gorai.009G359400 Gossypium raimondii HOM05D003098 ORTHO05D003634 3.4e-33 146.0 224 46.4
Gohir.D05G335700 Gossypium hirsutum HOM05D003098 ORTHO05D003634 4.5e-33 145.6 224 46.4
Gohir.D13G156400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 4.5e-33 145.6 234 43.2
Gohir.A04G046600 Gossypium hirsutum HOM05D003098 ORTHO05D003634 5.9e-33 145.2 224 46.4
Sed0018273 Sechium edule HOM05D003098 ORTHO05D003634 5.9e-33 145.2 229 46.3
Gorai.013G177000 Gossypium raimondii HOM05D003098 ORTHO05D003634 7.7e-33 144.8 234 43.2
AUR62037970 Chenopodium quinoa HOM05D003098 ORTHO05D003634 2.9e-32 142.9 304 42.1
AUR62041781 Chenopodium quinoa HOM05D003098 ORTHO05D003634 8.5e-32 141.4 281 43.4
SGA_v2.0_scaffold181G39782 Striga asiatica HOM05D003098 ORTHO05D003634 4.2e-31 139.0 218 47.7
Nn4g26567 Nelumbo nucifera HOM05D003098 ORTHO05D003634 1.6e-30 137.1 217 45.6
Sabra11G0092900 Salix brachista HOM05D003098 ORTHO05D003634 2.1e-30 136.7 204 47.1
Hund02321 Selenicereus undatus HOM05D003098 ORTHO05D003634 5.1e-29 132.1 292 39.4
SGA_v2.0_scaffold73G24350 Striga asiatica HOM05D003098 ORTHO05D003634 5.1e-29 132.1 225 44.9
Lalb_Chr03g0031451 Lupinus albus HOM05D003098 ORTHO05D003634 1.5e-28 130.6 219 42.9
THA.LOC104808077 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 2.6e-28 129.8 220 45.9
Gorai.002G038700 Gossypium raimondii HOM05D003098 ORTHO05D003634 4.4e-28 129.0 216 44.4
Gohir.A01G041800 Gossypium hirsutum HOM05D003098 ORTHO05D003634 5.7e-28 128.6 216 44.0
Gohir.D01G029400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 2.8e-27 126.3 216 43.5
unitig_62.g23089 Utricularia gibba HOM05D003098 ORTHO05D003634 1.4e-26 124.0 165 47.9
Actinidia04592 Actinidia chinensis HOM05D003098 ORTHO05D003634 3.1e-26 122.9 162 51.9
ECA236G5036 Erigeron canadensis HOM05D003098 ORTHO05D003634 9.1e-26 121.3 220 44.5
HanXRQChr11g0330331 Helianthus annuus HOM05D003098 ORTHO05D003634 9.1e-26 121.3 221 44.8
Ah.04g163840 Amaranthus hybridus HOM05D003098 ORTHO05D003634 3.4e-25 119.4 326 35.9
EL10Ac4g08489 Beta vulgaris HOM05D003098 ORTHO05D003634 2.2e-24 116.7 325 36.3
THA.LOC104812290 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 3.8e-24 115.9 218 42.2
TPR.G26632 Trifolium pratense HOM05D003098 ORTHO05D003634 5.0e-24 115.5 219 37.4
Sc03g0007710 Simmondsia chinensis HOM05D003098 ORTHO05D003634 1.2e-22 110.9 251 38.6
BcaB05g25139 Brassica carinata HOM05D003098 ORTHO05D003634 5.2e-21 105.5 216 40.7
BcaB03g16017 Brassica carinata HOM05D003098 ORTHO05D003634 1.5e-20 104.0 222 41.0
CSS0003040 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 2.2e-19 100.1 82 68.3
Zm00001eb376630 Zea mays HOM05D003098 ORTHO05D003634 6.3e-19 98.6 225 38.7
Sp5g33520 Schrenkiella parvula HOM05D003098 ORTHO05D003634 1.8e-18 97.1 225 36.9
SEGI_26890 Sequoiadendron giganteum HOM05D003098 ORTHO05D003634 3.1e-18 96.3 283 36.4
THA.LOC104813978 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 7.0e-18 95.1 173 42.8
BolC6t40256H Brassica oleracea HOM05D003098 ORTHO05D003634 2.6e-17 93.2 222 37.4
BcaC08g47416 Brassica carinata HOM05D003098 ORTHO05D003634 7.7e-17 91.7 222 36.9
A07p43680 Brassica napus HOM05D003098 ORTHO05D003634 7.7e-17 91.7 225 38.2
C06p52360 Brassica napus HOM05D003098 ORTHO05D003634 7.7e-17 91.7 222 36.9
BraA07t31880Z Brassica rapa HOM05D003098 ORTHO05D003634 7.7e-17 91.7 225 38.2
Lsat_1_v5_gn_7_101201 Lactuca sativa HOM05D003098 ORTHO05D003634 7.7e-17 91.7 239 38.1
ATR0730G170 Amborella trichopoda HOM05D003098 ORTHO05D003634 1.0e-16 91.3 219 38.8
BcaB07g34048 Brassica carinata HOM05D003098 ORTHO05D003634 1.3e-16 90.9 131 50.4
CARHR071940 Cardamine hirsuta HOM05D003098 ORTHO05D003634 6.5e-16 88.6 232 38.4
Sopen07g030020 Solanum pennellii HOM05D003098 ORTHO05D003634 1.1e-15 87.8 108 53.7
ECA234G0652 Erigeron canadensis HOM05D003098 ORTHO05D003634 1.9e-15 87.0 213 35.2
BolC5t30262H Brassica oleracea HOM05D003098 ORTHO05D003634 4.2e-15 85.9 121 48.8
CARHR017690 Cardamine hirsuta HOM05D003098 ORTHO05D003634 4.2e-15 85.9 140 45.7
Migut.M00650 Erythranthe guttata HOM05D003098 ORTHO05D003634 5.5e-15 85.5 227 34.8
Os02g0244100 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 5.5e-15 85.5 221 35.7
Oeu058426.1 Olea europaea HOM05D003098 ORTHO05D003634 1.2e-14 84.3 133 49.6
Solyc07g056690.2 Solanum lycopersicum HOM05D000111 ORTHO05D001334 1.6e-14 84.0 52 86.5
AT1G78420 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 2.1e-14 83.6 226 36.7
BcaC05g25664 Brassica carinata HOM05D003098 ORTHO05D003634 2.1e-14 83.6 121 47.9
HPP92_008221 Vanilla planifolia HOM05D003098 ORTHO05D003634 2.1e-14 83.6 210 34.3
C05p15520 Brassica napus HOM05D003098 ORTHO05D003634 3.6e-14 82.8 139 43.9
AL1G29360 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 4.7e-14 82.4 86 59.3
Thhalv10008156m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 4.7e-14 82.4 127 48.0
Carub.0002s2532 Capsella rubella HOM05D003098 ORTHO05D003634 6.1e-14 82.0 120 46.7
Thhalv10018644m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 1.0e-13 81.3 231 35.1
C02p35590 Brassica napus HOM05D003098 ORTHO05D003634 2.3e-13 80.1 217 35.9
Zm00001eb204560 Zea mays HOM05D003098 ORTHO05D003634 2.3e-13 80.1 223 37.2
A06p13040 Brassica napus HOM05D003098 ORTHO05D003634 5.2e-13 79.0 121 45.5
BraA06t24463Z Brassica rapa HOM05D003098 ORTHO05D003634 5.2e-13 79.0 121 45.5
A02p22180 Brassica napus HOM05D003098 ORTHO05D003634 6.7e-13 78.6 217 34.1
CDE10G0611 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 6.7e-13 78.6 215 35.8
BcaC03g15812 Brassica carinata HOM05D003098 ORTHO05D003634 1.2e-12 77.8 217 35.5
BolC2t09574H Brassica oleracea HOM05D003098 ORTHO05D003634 2.6e-12 76.6 217 35.5
BraA02t07222Z Brassica rapa HOM05D003098 ORTHO05D003634 2.6e-12 76.6 219 32.4
Sp1g15270 Schrenkiella parvula HOM05D003098 ORTHO05D003634 4.4e-12 75.9 123 47.2
AT1G17145 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 5.7e-12 75.5 120 44.2
AL2G38790 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 1.7e-11 73.9 227 34.4
Zm00001eb238650 Zea mays HOM05D003098 ORTHO05D003634 3.1e-10 69.7 222 37.4
Aa31LG4G2540 Aethionema arabicum HOM05D003098 ORTHO05D003634 1.0e-08 64.7 217 31.8
Pp3c3_24920 Physcomitrium patens HOM05D003098 ORTHO05D003634 1.0e-08 64.7 292 31.2
HanXRQChr10g0305971 Helianthus annuus HOM05D003098 ORTHO05D003634 1.5e-07 60.8 88 44.3
HanXRQChr10g0305981 Helianthus annuus HOM05D003098 ORTHO05D003634 1.5e-07 60.8 88 44.3
BolC6t38210H Brassica oleracea HOM05D003098 ORTHO05D003634 1.9e-07 60.5 157 37.6
Pp3c10_22920 Physcomitrium patens HOM05D003098 ORTHO05D003634 4.2e-07 59.3 295 31.9
Medtr7g032010 Medicago truncatula HOM05D003098 ORTHO05D003634 5.5e-07 58.9 144 37.5
HPP92_009664 Vanilla planifolia HOM05D003098 ORTHO05D003634 1.2e-06 57.8 216 29.6
Lsat_1_v5_gn_5_119821 Lactuca sativa HOM05D003098 ORTHO05D003634 4.7e-06 55.8 71 47.9


User provided reference genes

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