Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 2.8e-143 511.9 252 100.0
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 8.9e-134 480.3 252 94.8
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.2e-130 469.9 252 92.5
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 5.4e-123 444.5 250 88.8
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 8.6e-121 437.2 251 87.6
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.7e-116 422.9 252 83.7
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 8.7e-113 410.6 252 81.0
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 4.3e-112 408.3 230 87.0
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.2e-111 406.8 258 78.7
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 1.6e-111 406.4 244 82.8
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 2.0e-109 399.4 255 78.4
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 4.4e-109 398.3 253 77.1
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 2.4e-107 392.5 256 76.6
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 4.2e-107 391.7 260 76.5
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 6.0e-106 387.9 247 78.1
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.0e-105 387.1 254 76.4
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 1.3e-105 386.7 255 76.9
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 3.0e-105 385.6 240 80.0
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 3.0e-105 385.6 254 74.8
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 3.3e-104 382.1 246 77.2
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 4.3e-104 381.7 256 73.8
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 2.1e-103 379.4 247 75.3
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 2.8e-103 379.0 253 77.1
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 2.8e-103 379.0 259 74.5
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 3.6e-103 378.6 256 75.8
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 4.8e-103 378.3 244 77.0
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 4.8e-103 378.3 267 72.7
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 6.2e-103 377.9 257 73.5
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 6.2e-103 377.9 248 75.8
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 6.2e-103 377.9 249 78.3
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 6.2e-103 377.9 253 74.7
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 8.1e-103 377.5 252 75.8
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 3.1e-102 375.6 247 75.3
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 4.0e-102 375.2 253 76.7
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 9.0e-102 374.0 247 76.5
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 1.2e-101 373.6 226 80.1
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 1.2e-101 373.6 247 76.1
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 2.6e-101 372.5 254 76.4
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.5e-101 371.7 251 76.5
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 5.8e-101 371.3 243 75.7
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 7.6e-101 370.9 255 72.2
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 7.6e-101 370.9 244 75.8
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 1.3e-100 370.2 243 75.7
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 1.7e-100 369.8 227 81.1
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 1.7e-100 369.8 225 80.9
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.9e-100 369.0 257 73.9
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 2.9e-100 369.0 251 76.1
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 4.9e-100 368.2 246 75.2
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.9e-100 368.2 253 73.1
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 6.4e-100 367.9 258 71.3
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 8.4e-100 367.5 248 74.2
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 1.4e-99 366.7 249 73.1
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 1.4e-99 366.7 251 73.3
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 2.4e-99 365.9 254 71.7
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 5.4e-99 364.8 239 76.6
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 7.1e-99 364.4 277 70.0
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 7.1e-99 364.4 253 72.7
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 7.1e-99 364.4 252 74.2
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.2e-98 363.6 251 72.9
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 2.7e-98 362.5 255 72.9
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 2.7e-98 362.5 254 74.0
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 4.6e-98 361.7 255 71.4
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 4.6e-98 361.7 245 75.1
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 7.9e-98 360.9 254 73.6
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 1.3e-97 360.1 261 70.9
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 3.0e-97 359.0 228 77.6
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 3.9e-97 358.6 251 73.3
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 5.1e-97 358.2 208 84.6
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.5e-96 356.7 249 71.5
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 5.6e-96 354.8 236 75.4
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.3e-95 353.6 257 69.6
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 2.8e-95 352.4 230 75.2
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.8e-95 352.4 255 70.6
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 3.7e-95 352.1 252 72.6
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 9.0e-94 347.4 230 74.8
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 7.6e-93 344.4 248 70.6
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 7.1e-91 337.8 242 71.1
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 7.1e-91 337.8 242 71.1
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 2.1e-90 336.3 243 70.4
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.9e-89 332.0 242 69.8
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 5.1e-89 331.6 246 70.3
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 6.7e-89 331.3 242 69.4
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 9.6e-88 327.4 235 69.8
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 9.6e-88 327.4 250 67.6
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.3e-87 327.0 249 65.5
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.1e-87 326.2 242 68.6
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 4.8e-87 325.1 245 68.2
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 6.2e-87 324.7 246 67.9
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 4.0e-86 322.0 205 78.5
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 1.5e-85 320.1 243 69.1
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 2.2e-84 316.2 235 68.5
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 9.3e-83 310.8 249 64.7
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.7e-82 309.3 188 80.3
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 2.3e-81 306.2 238 66.4
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 3.9e-81 305.4 238 66.4
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 6.7e-81 304.7 243 66.7
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.5e-80 303.5 238 66.4
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 2.8e-79 299.3 250 65.2
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 2.9e-76 289.3 275 57.8
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 7.9e-74 281.2 163 81.6
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.5e-72 276.9 165 80.6
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 1.1e-70 270.8 152 84.9
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.2e-69 267.3 182 75.3
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.9e-68 262.7 168 76.8
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 6.5e-68 261.5 140 87.1
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 5.1e-65 251.9 171 75.4
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 1.5e-64 250.4 169 75.7
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.7e-63 246.9 242 55.4
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 2.0e-61 240.0 246 53.7
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 7.2e-59 231.5 216 56.0
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 1.7e-55 220.3 186 59.7
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 1.4e-54 217.2 170 70.0
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 2.5e-43 179.9 229 45.9
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 7.7e-37 158.3 103 75.7
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 3.0e-33 146.4 215 44.2
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 3.0e-33 146.4 88 78.4
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 2.0e-32 143.7 93 78.5
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 1.6e-29 134.0 192 47.4
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 2.7e-29 133.3 80 77.5
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 1.1e-27 127.9 87 71.3
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.0e-25 121.3 73 76.7
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.1e-22 111.3 90 58.9
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.4e-22 110.2 195 42.1
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.3e-20 103.6 58 84.5
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 5.0e-20 102.4 91 60.4
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.8e-17 94.0 144 45.8
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 5.8e-16 89.0 56 75.0
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 2.9e-15 86.7 137 33.6
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 3.7e-15 86.3 55 72.7
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.2e-13 81.3 208 34.6
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 6.0e-13 79.0 61 65.6
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 1.8e-09 67.4 64 56.2
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 4.4e-08 62.8 51 62.7
GSVIVG01016925001 Vitis vinifera HOM05D000106 ORTHO05D000160 2.2e-07 60.5 42 59.5
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 4.9e-07 59.3 84 45.2


User provided reference genes

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