Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 0.0e+00 1223.0 616 100.0
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 0.0e+00 1207.6 621 98.4
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 0.0e+00 1117.1 617 91.2
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 0.0e+00 1112.8 617 91.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 0.0e+00 1110.1 617 90.9
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 0.0e+00 1099.0 618 90.5
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 0.0e+00 1080.5 620 87.3
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 0.0e+00 1080.1 622 87.6
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 5.1e-311 1070.5 621 86.8
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.4e-310 1068.1 626 86.1
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 2.7e-309 1064.7 626 86.6
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 7.9e-309 1063.1 616 85.2
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 5.1e-308 1060.4 616 85.1
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 8.7e-308 1059.7 620 85.6
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 3.6e-306 1054.3 595 87.4
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 4.0e-305 1050.8 616 84.4
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 6.9e-305 1050.0 619 84.7
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.6e-304 1048.1 628 85.8
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 4.5e-304 1047.3 616 84.9
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.7e-301 1038.1 626 84.0
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.0e-300 1036.2 620 83.1
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 3.0e-300 1034.6 610 84.6
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.3e-299 1030.8 619 83.0
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.8e-298 1028.1 618 83.2
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.7e-298 1027.7 627 82.8
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 3.7e-298 1027.7 621 85.5
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 4.8e-298 1027.3 617 82.7
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.8e-297 1025.4 619 82.4
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 2.4e-297 1025.0 624 82.4
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 9.0e-297 1023.1 616 83.3
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 593 85.7
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.0e-295 1019.6 623 82.3
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.0e-295 1019.6 623 81.5
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.3e-295 1019.2 625 81.8
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.7e-295 1018.8 623 81.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.7e-295 1018.8 618 82.4
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 8.4e-295 1016.5 558 89.1
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.4e-294 1015.8 618 82.5
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 616 81.5
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 616 81.5
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 617 82.3
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 616 82.0
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 4.6e-293 1010.7 605 83.8
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 628 80.7
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 632 80.9
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 617 81.5
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 613 81.9
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 3.0e-292 1008.1 616 80.5
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 3.0e-292 1008.1 567 86.8
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 3.0e-292 1008.1 618 81.6
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 618 80.9
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 616 81.5
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 618 81.4
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 612 82.0
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.9e-291 1005.4 619 80.3
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 620 81.6
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 5.7e-291 1003.8 653 78.1
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 9.6e-291 1003.0 616 81.0
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 3.7e-290 1001.1 618 81.7
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 4.8e-290 1000.7 586 83.6
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 618 81.4
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 614 80.8
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.8e-289 998.8 618 81.2
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 9.0e-289 996.5 656 77.7
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.2e-288 996.1 616 80.0
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.6e-288 995.0 618 80.6
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.6e-288 995.0 649 78.0
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.6e-288 995.0 618 81.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.4e-288 994.6 620 81.1
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 5.8e-288 993.8 619 80.9
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 7.6e-288 993.4 620 80.6
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 7.6e-288 993.4 611 79.7
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.3e-287 992.6 617 81.0
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.2e-287 991.9 630 80.3
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 3.8e-287 991.1 616 80.5
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 6.5e-287 990.3 616 79.5
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 8.4e-287 989.9 618 81.1
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.4e-287 989.9 617 79.4
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.4e-286 989.2 586 83.6
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.4e-286 989.2 617 79.7
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 2.5e-286 988.4 612 79.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 4.2e-286 987.6 617 81.0
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 4.2e-286 987.6 608 81.2
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 4.2e-286 987.6 612 79.6
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 5.5e-286 987.3 616 80.5
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 4.6e-285 984.2 616 79.7
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 4.6e-285 984.2 618 80.9
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 6.1e-285 983.8 619 80.9
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 6.1e-285 983.8 619 80.9
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 7.9e-285 983.4 621 80.7
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 7.9e-285 983.4 618 80.9
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.0e-284 983.0 574 82.9
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.3e-284 982.6 623 80.4
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 1.8e-284 982.2 650 76.8
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 2.3e-284 981.9 624 79.8
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 3.9e-284 981.1 618 80.6
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 3.9e-284 981.1 618 80.6
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 3.9e-284 981.1 602 81.9
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 5.1e-284 980.7 625 79.2
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.7e-284 979.9 567 83.8
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.1e-283 979.5 616 80.5
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 1.5e-283 979.2 618 80.6
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 5.7e-283 977.2 558 84.8
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.3e-282 976.1 616 78.9
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 6.3e-282 973.8 693 73.0
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 6.3e-282 973.8 566 83.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 1.4e-281 972.6 566 83.4
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.8e-281 972.2 632 79.0
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.4e-280 968.0 635 80.2
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 8.5e-279 963.4 527 87.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 7.2e-278 960.3 624 77.1
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 9.4e-278 959.9 571 82.7
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.7e-272 940.3 558 81.9
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 2.9e-271 938.3 589 77.9
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.5e-267 926.0 582 77.8
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 3.7e-266 921.4 539 84.6
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.3e-266 920.6 570 81.6
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.5e-262 909.4 582 75.1
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.0e-260 903.3 628 75.5
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 8.2e-258 893.6 591 75.3
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.4e-254 880.2 527 81.4
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 5.2e-244 847.8 624 69.7
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.2e-243 846.7 626 71.1
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 4.0e-236 821.6 561 70.4
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.2e-235 820.1 575 69.7
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 4.0e-228 795.0 490 81.4
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 6.8e-228 794.3 490 80.2
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.0e-219 766.1 545 68.4
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 3.4e-219 765.4 499 75.8
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 4.4e-219 765.0 433 86.4
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.3e-218 763.5 489 79.8
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.9e-218 761.5 426 86.9
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.3e-210 736.9 490 76.5
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.1e-209 733.8 433 80.8
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 5.2e-204 714.9 565 62.5
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.8e-204 714.5 422 82.7
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.0e-196 688.7 403 84.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 7.1e-177 624.8 433 73.9
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.6e-168 597.0 585 53.3
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 5.5e-161 572.0 312 90.1
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 2.4e-148 530.0 484 62.4
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 8.5e-130 468.4 340 72.6
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-124 451.1 286 78.3
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 2.5e-105 387.1 277 67.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 5.8e-94 349.4 216 78.2
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 3.3e-89 333.6 210 81.9
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 2.1e-75 287.7 212 72.2
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 8.7e-74 282.3 557 33.0
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.6e-67 260.0 150 80.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 3.2e-60 237.3 131 84.0
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.3e-58 231.9 115 99.1
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 8.7e-58 229.2 133 79.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.5e-54 218.4 126 81.7
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 5.5e-52 209.9 184 62.5
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 7.2e-52 209.5 116 92.2
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.3e-50 205.3 114 81.6
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 6.7e-50 203.0 109 89.9
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.8e-45 187.2 105 81.0
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.5e-44 183.3 148 62.8
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 3.6e-43 180.6 146 70.5
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.6e-43 180.6 115 73.0
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.5e-41 175.3 252 46.8
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 4.5e-38 163.7 224 47.3
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.3e-33 147.5 154 57.1
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.1e-31 142.5 70 97.1
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.8e-26 125.2 116 60.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.2e-26 123.6 61 96.7
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.0e-21 109.4 212 35.4
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.2e-21 108.2 56 94.6
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.7e-16 92.0 180 30.6
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.7e-16 90.9 82 61.0
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 3.1e-15 87.8 67 58.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 5.7e-09 67.0 84 48.8


User provided reference genes

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