Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g042790.1 Solanum lycopersicum HOM05D009449 ORTHO05D011243 3.2e-128 461.8 243 100.0
PGSC0003DMG400034504 Solanum tuberosum HOM05D009449 ORTHO05D011243 1.1e-93 347.1 239 72.0
Sopen00g005000 Solanum pennellii HOM05D009449 ORTHO05D011243 7.1e-80 301.2 247 67.6
PGSC0003DMG400036178 Solanum tuberosum HOM05D009449 ORTHO05D011243 2.7e-79 299.3 194 71.6
PGSC0003DMG400035045 Solanum tuberosum HOM05D009449 ORTHO05D011243 2.8e-68 262.7 197 64.0
PGSC0003DMG400046216 Solanum tuberosum HOM05D009449 ORTHO05D011243 5.9e-58 228.4 207 57.5
CAN.G941.37 Capsicum annuum HOM05D009449 ORTHO05D011243 2.0e-50 203.4 179 53.1
CAN.G790.74 Capsicum annuum HOM05D009449 ORTHO05D011243 5.9e-42 175.3 190 46.8
PGSC0003DMG400047009 Solanum tuberosum HOM05D009449 ORTHO05D011243 6.5e-41 171.8 104 72.1
Sopen12g020310 Solanum pennellii HOM05D009449 ORTHO05D011243 2.3e-38 163.3 169 61.5
CAN.G3147.1 Capsicum annuum HOM05D009449 ORTHO05D011243 8.5e-33 144.8 179 41.9
CAN.G941.40 Capsicum annuum HOM05D009449 ORTHO05D011243 8.5e-33 144.8 179 41.9
CAN.G941.41 Capsicum annuum HOM05D009449 ORTHO05D011243 8.5e-33 144.8 179 41.9
PGSC0003DMG400029062 Solanum tuberosum HOM05D009449 ORTHO05D011243 2.0e-29 133.7 194 40.2
PGSC0003DMG400038160 Solanum tuberosum HOM05D009449 ORTHO05D011243 3.4e-29 132.9 201 38.3
PGSC0003DMG400041716 Solanum tuberosum HOM05D009449 ORTHO05D011243 1.3e-28 131.0 120 53.3
CAN.G941.38 Capsicum annuum HOM05D000541 ORTHO05D011243 1.7e-28 130.6 146 44.5
Solyc06g063080.1 Solanum lycopersicum HOM05D009449 ORTHO05D011243 1.8e-27 127.1 182 40.1
Sopen06g022530 Solanum pennellii HOM05D009449 ORTHO05D011243 2.7e-26 123.2 180 40.0
PGSC0003DMG400043445 Solanum tuberosum HOM05D009449 ORTHO05D011243 6.6e-25 118.6 159 40.3
Solyc12g040780.1 Solanum lycopersicum HOM05D009449 ORTHO05D011243 1.9e-24 117.1 151 45.7
Peaxi162Scf00038g02120 Petunia axillaris HOM05D009449 ORTHO05D011243 5.5e-24 115.5 147 44.2
Sopen12g020450 Solanum pennellii HOM05D009449 ORTHO05D011243 4.9e-20 102.4 128 45.3
Sopen12g020330 Solanum pennellii HOM05D009449 ORTHO05D011243 4.1e-19 99.4 55 78.2
DCAR_016173 Daucus carota HOM05D000327 ORTHO05D011243 2.7e-18 96.7 134 37.3
Cc04_g00820 Coffea canephora HOM05D000327 ORTHO05D011243 9.5e-16 88.2 137 31.4
Sopen12g020440 Solanum pennellii HOM05D009449 ORTHO05D011243 2.1e-15 87.0 198 31.3
Nitab4.5_0004890g0030 Nicotiana tabacum HOM05D000327 ORTHO05D000218 4.0e-14 82.8 146 36.3
Thecc.06G132300 Theobroma cacao HOM05D000327 ORTHO05D000218 1.5e-13 80.9 142 32.4
PGSC0003DMG400036778 Solanum tuberosum HOM05D009449 ORTHO05D011243 2.0e-13 80.5 55 61.8
PGSC0003DMG400038886 Solanum tuberosum HOM05D009449 ORTHO05D011243 2.6e-13 80.1 232 28.0
Rhsim08G0243700 Rhododendron simsii HOM05D000327 ORTHO05D011243 1.3e-12 77.8 132 31.8
FAN26G2072 Fragaria x ananassa HOM05D000327 ORTHO05D000218 2.9e-12 76.6 145 32.4
Prupe.3G031900 Prunus persica HOM05D000327 ORTHO05D000218 4.9e-12 75.9 134 32.8
PGSC0003DMG400040907 Solanum tuberosum HOM05D009449 ORTHO05D011243 6.4e-12 75.5 55 56.4
FAN26G1720 Fragaria x ananassa HOM05D000327 ORTHO05D000218 8.3e-12 75.1 145 32.4
Duzib235G0649 Durio zibethinus HOM05D000327 ORTHO05D000218 1.4e-11 74.3 182 29.1
Nn8g38526 Nelumbo nucifera HOM05D000327 ORTHO05D000218 1.4e-11 74.3 186 29.6
arahy.Tifrunner.gnm1.ann1.XA1YL7 Arachis hypogaea HOM05D000327 ORTHO05D000218 2.4e-11 73.6 217 24.9
Duzib192G0151 Durio zibethinus HOM05D000327 ORTHO05D000218 2.4e-11 73.6 183 30.1
Duzib192G0416 Durio zibethinus HOM05D000327 ORTHO05D000218 2.4e-11 73.6 183 30.1
Gohir.D05G145000 Gossypium hirsutum HOM05D000327 ORTHO05D000218 2.4e-11 73.6 184 28.8
Prupe.7G191800 Prunus persica HOM05D000327 ORTHO05D000218 2.4e-11 73.6 156 31.4
GSVIVG01016055001 Vitis vinifera HOM05D000327 ORTHO05D000218 2.4e-11 73.6 134 32.1
MD09G1173800 Malus domestica HOM05D000327 ORTHO05D000218 3.2e-11 73.2 138 31.9
arahy.Tifrunner.gnm1.ann1.NE9TLW Arachis hypogaea HOM05D000327 ORTHO05D000218 4.1e-11 72.8 218 24.8
Gorai.009G148900 Gossypium raimondii HOM05D000327 ORTHO05D000218 4.1e-11 72.8 184 28.8
MBI19_g40831_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 4.1e-11 72.8 186 31.7
Eucgr.E03579 Eucalyptus grandis HOM05D000327 ORTHO05D000218 7.0e-11 72.0 129 32.6
Haze_15184 Corylus avellana HOM05D000327 ORTHO05D000218 1.2e-10 71.2 140 30.0
Hma1.2p1_1281F.1_g272640 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.2e-10 71.2 130 36.9
Hma1.2p1_1281F.1_g272646 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.2e-10 71.2 130 36.9
Lsat_1_v5_gn_1_38601 Lactuca sativa HOM05D000327 ORTHO05D000218 1.2e-10 71.2 185 28.1
QL05p083434 Quercus lobata HOM05D000327 ORTHO05D000218 1.2e-10 71.2 135 33.3
Gohir.A05G142600 Gossypium hirsutum HOM05D000327 ORTHO05D000218 1.6e-10 70.9 137 33.6
Potri.003G187700 Populus trichocarpa HOM05D000327 ORTHO05D000218 1.6e-10 70.9 189 24.9
TWI63G1013 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 1.6e-10 70.9 199 28.1
Sabra01G0026100 Salix brachista HOM05D001467 ORTHO05D001447 2.7e-10 70.1 129 33.3
Sabra03G0137300 Salix brachista HOM05D000327 ORTHO05D000218 2.7e-10 70.1 183 26.8
FvH4_1g09510 Fragaria vesca HOM05D000327 ORTHO05D000218 3.5e-10 69.7 139 32.4
FAN19G2624 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.5e-10 69.7 139 33.1
Lj5C83T10 Lonicera japonica HOM05D000327 ORTHO05D000218 3.5e-10 69.7 126 33.3
Lj3g0011460 Lotus japonicus HOM05D000327 ORTHO05D000218 3.5e-10 69.7 142 28.9
Nn6g35714 Nelumbo nucifera HOM05D000327 ORTHO05D000218 3.5e-10 69.7 130 36.2
PSO104G0079 Papaver somniferum HOM05D000327 ORTHO05D000218 4.6e-10 69.3 144 33.3
Dinv22028 Davidia involucrata HOM05D000327 ORTHO05D000218 6.0e-10 68.9 139 33.8
Solyc06g068640.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 6.0e-10 68.9 139 31.7
Potri.001G037200 Populus trichocarpa HOM05D000327 ORTHO05D000218 7.8e-10 68.6 131 32.1
Zm00001eb177170 Zea mays HOM05D000327 ORTHO05D000218 7.8e-10 68.6 135 31.1
CsaV3_5G040290 Cucumis sativus L. HOM05D000327 ORTHO05D000218 1.3e-09 67.8 140 31.4
FvH4_6g27960 Fragaria vesca HOM05D000327 ORTHO05D000218 1.3e-09 67.8 190 27.4
FAN14G4162 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.3e-09 67.8 190 27.4
Medtr4g063810 Medicago truncatula HOM05D000327 ORTHO05D000218 1.7e-09 67.4 187 26.2
Actinidia21827 Actinidia chinensis HOM05D000327 ORTHO05D011243 3.0e-09 66.6 101 32.7
Manes.04G097800 Manihot esculenta HOM05D000327 ORTHO05D000218 3.0e-09 66.6 136 29.4
ClCG08G000540 Citrullus lanatus HOM05D000327 ORTHO05D000218 3.9e-09 66.2 129 31.8
FAN23G3113 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.9e-09 66.2 141 32.6
Medtr2g044420 Medicago truncatula HOM05D000327 ORTHO05D000218 3.9e-09 66.2 193 29.0
Atru.chr1.2754 Acer truncatum HOM05D000327 ORTHO05D000218 5.0e-09 65.9 160 30.0
CAN.G1089.4 Capsicum annuum HOM05D000327 ORTHO05D000218 5.0e-09 65.9 132 29.5
FvH4_1g09500 Fragaria vesca HOM05D000327 ORTHO05D000218 5.0e-09 65.9 139 30.9
FAN19G0157 Fragaria x ananassa HOM05D002094 ORTHO05D002113 5.0e-09 65.9 139 30.9
FAN26G0328 Fragaria x ananassa HOM05D000259 ORTHO05D000155 5.0e-09 65.9 139 30.9
FAN26G1366 Fragaria x ananassa HOM05D000259 ORTHO05D000155 5.0e-09 65.9 139 30.9
Glyma.07G044600 Glycine max HOM05D000327 ORTHO05D000218 5.0e-09 65.9 184 29.3
COL.COLO4_30892 Corchorus olitorius HOM05D000327 ORTHO05D000218 6.6e-09 65.5 129 32.6
Nn8g38525 Nelumbo nucifera HOM05D000327 ORTHO05D000218 6.6e-09 65.5 144 30.6
Dinv25502 Davidia involucrata HOM05D000327 ORTHO05D000218 8.6e-09 65.1 146 33.6
TPR.G18149 Trifolium pratense HOM05D000327 ORTHO05D000218 8.6e-09 65.1 122 30.3
FAN05G0876 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.1e-08 64.7 136 31.6
PSO421G0592 Papaver somniferum HOM05D000327 ORTHO05D000218 1.5e-08 64.3 127 34.6
PSO063G0620 Papaver somniferum HOM05D023693 ORTHO05D000218 1.9e-08 63.9 140 32.9
Peaxi162Scf01279g00015 Petunia axillaris HOM05D000327 ORTHO05D000218 1.9e-08 63.9 120 32.5
Psat1g138360 Pisum sativum HOM05D000327 ORTHO05D000218 1.9e-08 63.9 130 28.5
Thecc.06G132400 Theobroma cacao HOM05D000327 ORTHO05D000218 1.9e-08 63.9 177 27.1
Glyma.07G044500 Glycine max HOM05D000327 ORTHO05D000218 2.5e-08 63.5 183 28.4
TWI14G0739 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 2.5e-08 63.5 127 35.4
TAR383G0224 Trochodendron aralioides HOM05D000327 ORTHO05D000218 2.5e-08 63.5 136 29.4
vmacro19090 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 2.5e-08 63.5 134 30.6
CSS0017647 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.3e-08 63.2 136 30.9
CSS0040326 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.3e-08 63.2 136 30.9
Eucgr.E03577 Eucalyptus grandis HOM05D000327 ORTHO05D000218 3.3e-08 63.2 129 31.0
Eucgr.E03590 Eucalyptus grandis HOM05D000327 ORTHO05D000218 3.3e-08 63.2 130 30.0
Nitab4.5_0005428g0030 Nicotiana tabacum HOM05D000327 ORTHO05D000218 3.3e-08 63.2 140 29.3
Psat4g165960 Pisum sativum HOM05D000327 ORTHO05D000218 4.3e-08 62.8 207 25.6
QL05p083473 Quercus lobata HOM05D000327 ORTHO05D000218 4.3e-08 62.8 138 31.9
QL05p083528 Quercus lobata HOM05D000327 ORTHO05D000218 4.3e-08 62.8 138 31.9
RcHm_v2.0_Chr2g0096041 Rosa chinensis HOM05D000327 ORTHO05D000218 4.3e-08 62.8 105 35.2
arahy.Tifrunner.gnm1.ann1.K4MJKS Arachis hypogaea HOM05D000327 ORTHO05D000218 5.6e-08 62.4 167 26.3
Eucgr.E03050 Eucalyptus grandis HOM05D000327 ORTHO05D000218 5.6e-08 62.4 129 31.0
Eucgr.E03057 Eucalyptus grandis HOM05D000327 ORTHO05D000218 5.6e-08 62.4 130 30.0
CANSAT78G1564 Cannabis sativa HOM05D000327 ORTHO05D000218 7.3e-08 62.0 148 25.7
Cpa.g.sc67.21 Carica papaya HOM05D000327 ORTHO05D000218 7.3e-08 62.0 133 31.6
PSO170G4720 Papaver somniferum HOM05D000327 ORTHO05D000218 9.5e-08 61.6 135 32.6
ECA246G5246 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.2e-07 61.2 178 26.4
ECA247G4029 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.6e-07 60.8 124 28.2
Nitab4.5_0000377g0040 Nicotiana tabacum HOM05D000327 ORTHO05D000218 1.6e-07 60.8 190 29.5
Thecc.06G132700 Theobroma cacao HOM05D000327 ORTHO05D000218 1.6e-07 60.8 136 30.1
Atru.chr7.1773 Acer truncatum HOM05D000327 ORTHO05D000218 2.1e-07 60.5 160 28.1
Eucgr.E03058 Eucalyptus grandis HOM05D000327 ORTHO05D000218 2.8e-07 60.1 129 30.2
Eucgr.E03591 Eucalyptus grandis HOM05D000327 ORTHO05D000218 2.8e-07 60.1 129 29.5
QL05p083515 Quercus lobata HOM05D000327 ORTHO05D000218 2.8e-07 60.1 135 31.9
PGSC0003DMG400044849 Solanum tuberosum HOM05D009449 ORTHO05D011243 6.2e-07 58.9 63 46.0
Nitab4.5_0005801g0010 Nicotiana tabacum HOM05D000327 ORTHO05D000218 8.0e-07 58.5 190 29.5
TWI74G1609 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 8.0e-07 58.5 133 28.6
arahy.Tifrunner.gnm1.ann1.Y4HIMP Arachis hypogaea HOM05D000327 ORTHO05D000218 1.1e-06 58.2 98 32.7
Cc06_g12760 Coffea canephora HOM05D000327 ORTHO05D000218 1.1e-06 58.2 188 27.7
QL05p083540 Quercus lobata HOM05D000327 ORTHO05D000218 1.1e-06 58.2 132 32.6
Sc08g0009200 Simmondsia chinensis HOM05D000327 ORTHO05D000218 1.1e-06 58.2 150 28.0
CAN.G1569.10 Capsicum annuum HOM05D000327 ORTHO05D000218 1.4e-06 57.8 120 32.5
RcHm_v2.0_Chr2g0096061 Rosa chinensis HOM05D000327 ORTHO05D000218 1.4e-06 57.8 132 33.3
PGSC0003DMG400027818 Solanum tuberosum HOM05D000327 ORTHO05D000218 1.8e-06 57.4 124 31.5
Actinidia24436 Actinidia chinensis HOM05D000327 ORTHO05D011243 2.3e-06 57.0 75 34.7
Prupe.3G107200 Prunus persica HOM05D000327 ORTHO05D000218 2.3e-06 57.0 123 29.3
TPR.G36737 Trifolium pratense HOM05D000327 ORTHO05D000218 2.3e-06 57.0 133 29.3


User provided reference genes

Program Settings