Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.1e-88 328.9 163 100.0
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 5.8e-78 294.3 143 100.0
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 6.1e-67 257.7 142 84.5
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 6.1e-67 257.7 142 84.5
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 1.4e-66 256.5 143 83.9
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 1.8e-66 256.1 143 83.9
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 3.0e-66 255.4 143 82.5
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 3.9e-66 255.0 143 82.5
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 3.9e-66 255.0 143 82.5
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 6.7e-66 254.2 142 82.4
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 1.1e-65 253.4 143 81.8
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 1.5e-65 253.1 143 83.2
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 1.5e-65 253.1 143 82.5
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 1.5e-65 253.1 143 83.2
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 2.0e-65 252.7 141 80.9
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 2.5e-65 252.3 143 81.1
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 2.5e-65 252.3 143 81.1
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 3.3e-65 251.9 142 83.1
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 3.3e-65 251.9 143 81.8
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 4.3e-65 251.5 143 81.8
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 5.7e-65 251.1 143 80.4
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 9.7e-65 250.4 143 79.7
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 1.3e-64 250.0 142 81.0
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 1.7e-64 249.6 143 80.4
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 2.2e-64 249.2 137 82.5
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 2.2e-64 249.2 143 81.1
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 2.8e-64 248.8 143 80.4
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 2.8e-64 248.8 142 79.6
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 3.7e-64 248.4 142 79.6
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 3.7e-64 248.4 142 79.6
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 4.8e-64 248.1 143 80.4
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 6.3e-64 247.7 143 80.4
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 6.3e-64 247.7 143 79.7
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 8.2e-64 247.3 143 79.0
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 1.4e-63 246.5 142 78.9
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 3.1e-63 245.4 149 75.2
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 5.3e-63 244.6 143 77.6
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 6.9e-63 244.2 143 79.0
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 6.9e-63 244.2 143 79.0
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 6.9e-63 244.2 143 79.7
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 6.9e-63 244.2 144 81.2
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 9.1e-63 243.8 143 77.6
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 9.1e-63 243.8 171 68.4
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.2e-62 243.4 137 80.3
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 7.7e-62 240.7 151 76.8
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 2.9e-61 238.8 143 76.2
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 5.0e-61 238.0 143 75.5
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 1.1e-60 236.9 143 76.9
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 2.5e-60 235.7 143 75.5
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 2.5e-60 235.7 142 76.8
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 2.5e-60 235.7 188 61.7
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 4.7e-59 231.5 145 75.2
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 7.9e-59 230.7 130 83.1
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 1.0e-58 230.3 145 75.2
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 1.8e-58 229.6 119 90.8
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 1.1e-57 226.9 130 82.3
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 1.1e-57 226.9 142 70.4
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 1.5e-57 226.5 129 81.4
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 7.4e-57 224.2 145 73.8
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 7.4e-57 224.2 194 59.8
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 2.8e-56 222.2 134 79.9
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 1.1e-55 220.3 132 78.0
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 1.4e-55 219.9 132 76.5
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 1.4e-55 219.9 118 88.1
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 1.8e-55 219.5 132 76.5
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 5.3e-55 218.0 132 77.3
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 9.1e-55 217.2 142 68.3
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 2.6e-54 215.7 124 78.2
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 2.6e-54 215.7 156 73.1
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 4.5e-54 214.9 132 76.5
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 1.3e-53 213.4 142 70.4
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 1.3e-53 213.4 115 87.0
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 2.2e-53 212.6 142 70.4
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 3.8e-53 211.8 132 75.0
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 3.8e-53 211.8 132 75.0
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 1.5e-52 209.9 142 70.4
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 5.5e-52 208.0 142 68.3
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 1.2e-51 206.8 142 68.3
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 3.6e-51 205.3 142 67.6
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 1.8e-50 203.0 142 66.9
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 2.3e-50 202.6 143 65.7
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 2.3e-50 202.6 142 66.9
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 3.0e-50 202.2 142 66.9
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 3.0e-50 202.2 142 66.9
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 5.2e-50 201.4 142 66.2
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 9.7e-49 197.2 142 66.9
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 3.7e-48 195.3 143 65.0
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 3.5e-46 188.7 141 66.0
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 4.5e-46 188.3 143 65.0
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 9.4e-44 180.6 142 62.7
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 1.0e-42 177.2 144 61.8
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 3.0e-42 175.6 103 75.7
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 2.0e-38 162.9 167 55.1
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 3.7e-32 142.1 97 67.0
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 1.2e-30 137.1 117 61.5
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 3.8e-29 132.1 78 75.6
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 7.5e-25 117.9 134 44.8
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 2.2e-24 116.3 141 41.8
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 2.8e-19 99.4 82 62.2
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 3.4e-17 92.4 61 68.9
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 4.4e-17 92.0 76 60.5
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 1.9e-15 86.7 55 70.9
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 3.2e-15 85.9 54 70.4
CDE08G0659 Ceratophyllum demersum HOM05D000645 ORTHO05D000494 7.1e-07 58.2 145 26.2
Cpa.g.sc248.8 Carica papaya HOM05D001771 ORTHO05D001876 1.2e-06 57.4 125 29.6
Duzib192G0624 Durio zibethinus HOM05D000836 ORTHO05D000709 1.2e-06 57.4 140 27.1
Pp3c7_9990 Physcomitrium patens HOM05D004669 ORTHO05D005767 2.7e-06 56.2 114 31.6
C04p27210 Brassica napus HOM05D001771 ORTHO05D001876 3.5e-06 55.8 112 31.2
BolC4t24253H Brassica oleracea HOM05D001771 ORTHO05D001876 3.5e-06 55.8 112 31.2
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 3.5e-06 55.8 126 33.3
Thhalv10023227m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 4.6e-06 55.5 68 42.6
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 6.0e-06 55.1 126 32.5
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 7.8e-06 54.7 126 31.7
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 7.8e-06 54.7 126 31.7
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 7.8e-06 54.7 126 31.7


User provided reference genes

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