Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.0e-80 302.4 152 100.0
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.9e-39 165.6 210 48.1
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.9e-38 162.9 196 50.0
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 3.3e-35 152.1 210 45.2
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-34 149.4 212 42.9
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-34 147.9 209 43.1
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-34 147.9 209 43.1
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-34 147.9 209 43.1
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-34 147.9 209 43.1
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 6.3e-34 147.9 209 43.1
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.4e-33 146.7 195 45.6
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 2.5e-30 136.0 177 46.9
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.4e-28 130.2 223 38.6
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 2.3e-28 129.4 164 45.7
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 5.2e-28 128.3 249 35.3
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 3.5e-24 115.5 72 79.2
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 3.8e-23 112.1 72 76.4
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 4.2e-22 108.6 72 75.0
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.2e-22 108.6 72 73.6
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 9.5e-22 107.5 69 72.5
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.6e-21 106.7 71 73.2
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.6e-21 106.7 71 73.2
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.6e-21 106.7 72 76.4
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 72.2
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 72.2
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-21 106.3 72 70.8
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 3.6e-21 105.5 72 70.8
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.6e-21 105.5 72 73.6
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 3.6e-21 105.5 72 73.6
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 3.6e-21 105.5 72 73.6
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.6e-21 105.5 72 73.6
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 6.1e-21 104.8 72 70.8
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 1.0e-20 104.0 71 71.8
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.4e-20 103.6 72 73.6
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.4e-20 103.6 71 71.8
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.8e-20 103.2 72 70.8
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 2.3e-20 102.8 72 68.1
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.8e-20 100.9 72 69.4
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 1.5e-19 100.1 72 66.7
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 2.0e-19 99.8 165 43.6
CAN.G1078.3 Capsicum annuum HOM05D002578 ORTHO05D005154 2.6e-19 99.4 67 73.1
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 2.6e-19 99.4 72 68.1
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 7.5e-19 97.8 72 66.7
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 3.7e-18 95.5 72 68.1
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 3.7e-18 95.5 189 34.4
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 6.3e-18 94.7 71 64.8
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.4e-17 93.6 77 66.2
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.4e-17 93.6 77 66.2
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 4.1e-17 92.0 72 61.1
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 4.1e-17 92.0 72 61.1
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 4.1e-17 92.0 72 61.1
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.0e-17 91.3 76 65.8
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.0e-17 91.3 74 66.2
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 2.0e-16 89.7 54 75.9
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 3.5e-16 89.0 72 65.3
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 3.5e-16 89.0 72 65.3
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.0e-15 87.4 72 63.9
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 1.3e-15 87.0 71 57.7
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 1.7e-15 86.7 72 59.7
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 1.7e-15 86.7 45 86.7
CAN.G114.8 Capsicum annuum HOM05D002578 ORTHO05D002698 2.3e-15 86.3 108 46.3
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 2.3e-15 86.3 72 62.5
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.9e-15 85.9 72 63.9
Migut.D01327 Erythranthe guttata HOM05D002578 ORTHO05D005154 6.6e-15 84.7 60 70.0
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 9.5e-14 80.9 79 54.4
Oeu054717.1 Olea europaea HOM05D002578 ORTHO05D002698 1.2e-13 80.5 70 60.0
Lsat_1_v5_gn_5_50481 Lactuca sativa HOM05D002578 ORTHO05D002698 1.6e-13 80.1 70 57.1
Nitab4.5_0004430g0050 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.6e-13 80.1 120 41.7
SGA_v2.0_scaffold907G53717 Striga asiatica HOM05D002578 ORTHO05D002698 1.6e-13 80.1 70 58.6
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.8e-13 79.3 115 40.0
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.8e-13 79.3 115 40.0
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.8e-13 79.3 115 40.0
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.8e-13 79.3 115 40.0
DCAR_032525 Daucus carota HOM05D002578 ORTHO05D002698 3.6e-13 79.0 70 57.1
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 3.6e-13 79.0 63 60.3
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 8.0e-13 77.8 108 41.7
Nitab4.5_0004697g0040 Nicotiana tabacum HOM05D002578 ORTHO05D002698 8.0e-13 77.8 70 57.1
Oeu060398.1 Olea europaea HOM05D002578 ORTHO05D002698 8.0e-13 77.8 70 57.1
HanXRQChr16g0500141 Helianthus annuus HOM05D002578 ORTHO05D002698 1.0e-12 77.4 87 49.4
Sed0005264 Sechium edule HOM05D002578 ORTHO05D002698 1.4e-12 77.0 112 42.0
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-12 76.6 45 73.3
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 1.8e-12 76.6 54 63.0
HanXRQChr00c0593g0576411 Helianthus annuus HOM05D002578 ORTHO05D002698 2.3e-12 76.3 70 55.7
HanXRQChr05g0152531 Helianthus annuus HOM05D002578 ORTHO05D002698 2.3e-12 76.3 70 55.7
HanXRQChr11g0327011 Helianthus annuus HOM05D002578 ORTHO05D002698 2.3e-12 76.3 70 55.7
Lj2C1234G17 Lonicera japonica HOM05D002578 ORTHO05D002698 2.3e-12 76.3 101 45.5
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 3.0e-12 75.9 71 53.5
Gohir.1Z049366 Gossypium hirsutum HOM05D002578 ORTHO05D002698 5.2e-12 75.1 68 54.4
Lj2P1239T81 Lonicera japonica HOM05D002578 ORTHO05D002698 6.8e-12 74.7 94 45.7
Lju5009P0T59 Lonicera japonica HOM05D002578 ORTHO05D002698 6.8e-12 74.7 94 45.7
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.8e-12 74.7 72 61.1
PSO548G0035 Papaver somniferum HOM05D002578 ORTHO05D002698 1.2e-11 73.9 118 39.0
Gohir.D01G102177 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.5e-11 73.6 68 52.9
Nitab4.5_0000382g0100 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.5e-11 73.6 80 50.0
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 2.0e-11 73.2 73 57.5
RcHm_v2.0_Chr1g0329561 Rosa chinensis HOM05D002578 ORTHO05D002698 2.0e-11 73.2 105 41.0
RcHm_v2.0_CPg0501841 Rosa chinensis HOM05D002578 ORTHO05D002698 2.0e-11 73.2 105 40.0
Nn070s42374 Nelumbo nucifera HOM05D002578 ORTHO05D002698 2.6e-11 72.8 108 39.8
BolC7t41707H Brassica oleracea HOM05D002578 ORTHO05D002698 3.4e-11 72.4 56 64.3
BolSC29t60613H Brassica oleracea HOM05D002578 ORTHO05D002698 3.4e-11 72.4 56 64.3
AL2G20520 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 4.4e-11 72.0 75 49.3
AL2G21760 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 4.4e-11 72.0 75 49.3
BolSC35t60673H Brassica oleracea HOM05D002578 ORTHO05D002698 4.4e-11 72.0 75 49.3
ATCG00810 Arabidopsis thaliana HOM05D002578 ORTHO05D002698 5.7e-11 71.6 75 49.3
C09p40110 Brassica napus HOM05D002578 ORTHO05D002698 5.7e-11 71.6 75 48.0
BolC9t56906H Brassica oleracea HOM05D002578 ORTHO05D002698 5.7e-11 71.6 75 48.0
Gohir.1Z049734 Gossypium hirsutum HOM05D002578 ORTHO05D002698 5.7e-11 71.6 68 51.5
Gorai.009G325200 Gossypium raimondii HOM05D002578 ORTHO05D002698 5.7e-11 71.6 68 51.5
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 1.3e-10 70.5 56 60.7
CiPaw.03G067300 Carya illinoinensis HOM05D002578 ORTHO05D002698 1.3e-10 70.5 111 38.7
Lj2g0018876 Lotus japonicus HOM05D002578 ORTHO05D002698 1.3e-10 70.5 122 35.2
AL1G45060 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 1.7e-10 70.1 75 48.0
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.7e-10 70.1 94 44.7
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 2.9e-10 69.3 107 38.3
Ciclev10005921m.g Citrus clementina HOM05D002578 ORTHO05D002698 2.9e-10 69.3 57 59.6
PGR111G0094 Punica granatum HOM05D002578 ORTHO05D002698 3.7e-10 68.9 103 43.7
TPR.G22135 Trifolium pratense HOM05D002578 ORTHO05D002698 6.4e-10 68.2 120 34.2
Gohir.A12G024432 Gossypium hirsutum HOM05D002578 ORTHO05D002698 8.3e-10 67.8 68 50.0
Phvul.004G001400 Phaseolus vulgaris HOM05D002578 ORTHO05D002698 1.1e-09 67.4 103 39.8
Ca_04123_v3 Cicer arietinum L. HOM05D002578 ORTHO05D002698 1.4e-09 67.0 120 33.3
QL02p048586 Quercus lobata HOM05D002578 ORTHO05D002698 1.4e-09 67.0 93 41.9
HPP92_007212 Vanilla planifolia HOM05D002578 ORTHO05D002698 1.4e-09 67.0 107 39.3
FAN09G4709 Fragaria x ananassa HOM05D002578 ORTHO05D002698 1.8e-09 66.6 105 38.1
HanXRQChr16g0503671 Helianthus annuus HOM05D002578 ORTHO05D002698 1.8e-09 66.6 56 62.5
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 2.4e-09 66.2 54 63.0
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 2.4e-09 66.2 60 55.0
Lj1g0008959 Lotus japonicus HOM05D002578 ORTHO05D002698 4.1e-09 65.5 112 35.7
Lalb_Chr03g0038431 Lupinus albus HOM05D002578 ORTHO05D002698 5.4e-09 65.1 120 33.3
Glyma.05G001100 Glycine max HOM05D002578 ORTHO05D002698 9.2e-09 64.3 119 33.6
VMungo0464G0334 Vigna mungo HOM05D002578 ORTHO05D002698 9.2e-09 64.3 101 39.6
Medtr7g100410 Medicago truncatula HOM05D002578 ORTHO05D002698 1.6e-08 63.5 113 34.5
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 2.0e-08 63.2 50 60.0
RcHm_v2.0_Chr6g0286361 Rosa chinensis HOM05D002578 ORTHO05D002698 2.0e-08 63.2 56 60.7
Ah.10g027310 Amaranthus hybridus HOM05D002578 ORTHO05D002698 2.7e-08 62.8 44 65.9
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea HOM05D002578 ORTHO05D002698 2.7e-08 62.8 122 32.0
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea HOM05D002578 ORTHO05D002698 2.7e-08 62.8 122 32.0
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 2.7e-08 62.8 56 53.6
Glyma.19G001100 Glycine max HOM05D002578 ORTHO05D002698 4.6e-08 62.0 116 33.6
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 7.8e-08 61.2 73 47.9
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 7.8e-08 61.2 74 41.9
ClCG04G000500 Citrullus lanatus HOM05D002578 ORTHO05D002698 1.0e-07 60.8 45 64.4
Nn4g25227 Nelumbo nucifera HOM05D002578 ORTHO05D002698 1.5e-06 57.0 78 43.6
RcHm_v2.0_Chr5g0025841 Rosa chinensis HOM05D002578 ORTHO05D002698 1.5e-06 57.0 42 66.7
Cre13.g580850 Chlamydomonas reinhardtii HOM05D002578 ORTHO05D002698 2.5e-06 56.2 55 47.3
Peaxi162Scf00362g00547 Petunia axillaris HOM05D002578 ORTHO05D002698 2.5e-06 56.2 40 70.0
Migut.D01326 Erythranthe guttata HOM05D002578 ORTHO05D002698 3.3e-06 55.8 41 68.3
MCO09G075 Micromonas commoda HOM05D002578 ORTHO05D002698 5.6e-06 55.1 58 46.6
Zm00001eb437150 Zea mays HOM05D002578 ORTHO05D002698 7.3e-06 54.7 96 35.4
Zm00001eb442200 Zea mays HOM05D002578 ORTHO05D002698 7.3e-06 54.7 96 35.4
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 9.5e-06 54.3 71 47.9


User provided reference genes

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