Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 7.7e-178 627.1 330 100.0
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 2.2e-177 625.5 330 99.7
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 2.1e-175 619.0 330 98.2
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.7e-161 572.8 328 91.8
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.1e-160 570.1 330 90.6
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 4.2e-160 568.2 328 91.5
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 5.8e-141 504.6 327 79.2
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 6.4e-140 501.1 326 79.1
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 3.5e-138 495.4 338 78.7
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.1e-136 490.3 307 83.4
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 2.8e-135 485.7 323 78.3
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 2.0e-133 479.6 325 75.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 7.8e-130 467.6 329 74.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.5e-128 463.4 297 78.5
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.5e-128 463.4 328 73.8
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 3.3e-128 462.2 358 70.9
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.6e-128 461.5 328 72.9
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 9.5e-128 460.7 323 73.7
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.5e-128 460.7 328 73.5
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 1.2e-127 460.3 326 73.9
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 2.8e-127 459.1 328 70.7
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.8e-127 459.1 318 75.2
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.8e-126 456.4 317 73.5
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.4e-126 456.1 334 72.2
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 2.4e-126 456.1 335 71.9
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 8.9e-126 454.1 338 72.5
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.6e-125 452.6 329 73.6
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 3.4e-125 452.2 311 73.6
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 9.9e-125 450.7 327 72.5
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.7e-124 449.9 338 71.6
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.9e-124 449.1 309 74.1
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 3.8e-124 448.7 291 79.7
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 6.4e-124 448.0 331 71.6
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.9e-123 446.4 326 71.8
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.2e-123 445.7 322 71.4
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 3.2e-123 445.7 310 72.6
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 7.8e-122 441.0 325 71.1
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 7.8e-122 441.0 399 63.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 7.8e-122 441.0 314 76.1
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 2.3e-121 439.5 322 72.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 5.1e-121 438.3 328 70.7
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 2.5e-120 436.0 313 72.8
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 5.6e-120 434.9 324 71.3
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 7.3e-120 434.5 324 71.0
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 7.3e-120 434.5 328 68.6
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 9.6e-120 434.1 316 71.2
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 1.3e-119 433.7 326 69.6
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.6e-119 433.3 322 69.9
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.6e-119 433.3 322 70.2
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.1e-119 433.0 330 69.4
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 4.8e-119 431.8 316 73.1
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 4.8e-119 431.8 327 71.3
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 6.2e-119 431.4 320 70.0
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.4e-118 430.3 322 70.8
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.4e-118 430.3 322 71.4
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.8e-118 429.9 326 70.2
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.4e-118 429.5 322 70.5
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.4e-118 429.5 411 57.4
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 5.3e-118 428.3 292 75.3
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.2e-117 427.2 331 67.7
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.0e-117 426.4 320 70.6
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 5.8e-117 424.9 318 69.8
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 9.9e-117 424.1 287 76.0
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.3e-116 423.7 349 66.2
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.3e-116 423.7 326 68.7
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.2e-116 422.9 329 67.8
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.2e-116 422.9 320 70.0
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.9e-116 422.5 329 67.8
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.9e-116 422.5 329 67.8
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.8e-116 422.2 341 67.2
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 4.9e-116 421.8 320 68.1
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 4.9e-116 421.8 312 71.8
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 8.4e-116 421.0 323 68.1
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 8.4e-116 421.0 330 69.4
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.4e-115 420.2 329 67.5
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.4e-115 419.5 328 68.6
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 4.6e-114 415.2 325 68.0
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 7.8e-114 414.5 290 73.8
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 7.8e-114 414.5 320 69.1
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.0e-113 414.1 336 66.4
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.3e-113 413.7 320 66.9
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 3.0e-113 412.5 316 69.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 8.7e-113 411.0 330 65.2
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 1.5e-112 410.2 327 65.4
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.5e-112 410.2 343 65.3
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.9e-112 409.8 329 66.0
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 2.5e-112 409.5 344 65.1
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 5.6e-112 408.3 312 69.6
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-111 407.1 320 68.8
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.3e-111 407.1 320 68.8
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.3e-111 407.1 318 68.9
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.6e-111 406.8 321 67.3
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.6e-111 406.8 320 68.8
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.1e-110 404.1 326 66.6
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-110 403.7 309 69.6
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.8e-110 403.3 317 68.1
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.4e-110 402.9 287 70.4
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 3.1e-110 402.5 328 65.2
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 4.0e-110 402.1 288 70.8
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 9.0e-110 401.0 319 67.1
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-109 400.6 318 67.3
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.2e-109 400.6 318 67.3
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-109 400.2 307 68.7
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.5e-109 400.2 317 67.8
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 4.5e-109 398.7 323 67.5
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 4.5e-109 398.7 318 67.9
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 5.8e-109 398.3 317 67.5
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.8e-108 395.6 374 59.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 6.4e-108 394.8 321 65.1
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 7.1e-107 391.3 329 62.6
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 7.1e-107 391.3 322 66.5
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 9.3e-107 391.0 312 67.0
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-106 390.6 335 65.7
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.7e-106 389.4 261 75.5
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.7e-106 389.4 299 69.2
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-105 387.1 317 67.2
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.8e-105 386.7 319 66.1
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 3.9e-105 385.6 285 68.1
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 1.1e-104 384.0 335 63.9
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.1e-102 377.5 295 65.8
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 4.5e-101 372.1 293 65.5
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 4.5e-101 372.1 318 63.8
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 7.6e-101 371.3 308 64.3
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.9e-100 369.4 391 55.8
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.6e-98 363.6 346 60.1
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 9.3e-91 337.8 346 56.9
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 2.1e-90 336.7 318 59.7
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 3.5e-90 335.9 314 56.7
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 5.3e-86 322.0 317 56.5
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 1.4e-83 313.9 330 58.2
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 4.6e-82 308.9 325 57.8
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.3e-81 306.6 296 55.7
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 3.9e-81 305.8 296 55.7
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 9.7e-80 301.2 318 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.4e-77 292.7 329 49.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 4.2e-75 285.8 325 53.2
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 1.3e-71 274.2 252 55.6
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 4.1e-70 269.2 327 49.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.5e-69 267.3 190 79.5
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 3.5e-69 266.2 270 56.3
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 6.5e-68 261.9 180 73.9
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.1e-67 261.2 181 74.6
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 1.9e-67 260.4 324 49.1
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 8.8e-65 251.5 231 63.2
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 7.0e-62 241.9 266 56.8
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 5.0e-60 235.7 246 58.5
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.5e-59 234.2 150 76.7
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.2e-51 206.1 135 77.8
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-47 193.7 186 62.9
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 5.5e-43 179.1 303 39.9
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.6e-42 177.6 161 65.8
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.5e-40 171.0 118 77.1
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 4.1e-38 162.9 160 62.5
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 2.2e-31 140.6 352 34.4
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-28 131.7 148 56.1
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.6e-26 124.4 298 33.2
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 8.9e-25 118.6 73 78.1
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.4e-22 109.4 90 57.8
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.0e-20 103.6 78 66.7
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 4.7e-18 96.3 99 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.2e-17 92.8 90 54.4
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.9e-14 84.3 61 72.1
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 6.2e-10 69.3 43 69.8
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.4e-09 67.4 106 45.3
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 6.8e-09 65.9 91 45.1
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 8.9e-09 65.5 80 43.8
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 1.7e-07 61.2 68 48.5
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 2.9e-07 60.5 52 57.7
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 8.4e-07 58.9 38 81.6


User provided reference genes

Program Settings