Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 0.0e+00 1171.8 570 100.0
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 0.0e+00 1157.5 570 98.4
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.6e-306 1054.7 570 90.9
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.7e-297 1025.4 570 86.0
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.7e-297 1025.4 571 86.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.9e-296 1021.9 570 85.6
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 2.5e-293 1011.5 570 84.6
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 3.3e-293 1011.1 569 84.0
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 7.3e-293 1010.0 555 86.3
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 7.3e-293 1010.0 570 85.1
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 6.2e-292 1006.9 553 86.1
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 6.2e-292 1006.9 554 90.3
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 7.6e-290 1000.0 558 84.8
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.4e-288 995.0 570 85.1
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 4.1e-288 994.2 558 84.2
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 4.1e-288 994.2 558 84.4
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 3.5e-287 991.1 568 83.6
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 3.0e-286 988.0 558 84.2
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 3.9e-286 987.6 535 86.4
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 5.1e-286 987.3 570 83.2
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.1e-285 986.1 558 84.1
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 2.5e-285 984.9 563 83.5
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 5.6e-285 983.8 553 84.4
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 5.6e-285 983.8 558 83.9
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 2.1e-284 981.9 570 81.6
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 2.1e-284 981.9 570 82.1
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 4.7e-284 980.7 552 84.2
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 4.7e-284 980.7 558 83.0
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 9.9e-282 973.0 558 82.1
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 6.4e-281 970.3 553 82.3
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 9.3e-280 966.5 556 82.6
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 1.2e-279 966.1 572 80.6
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.0e-278 961.4 523 86.2
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 5.1e-278 960.7 534 84.6
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.6e-278 960.3 539 84.2
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 3.6e-276 954.5 567 80.6
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 4.8e-276 954.1 546 83.3
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.1e-275 951.4 548 82.1
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 4.0e-275 951.0 550 81.8
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 5.3e-275 950.7 552 81.2
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.9e-275 950.3 535 83.7
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 2.0e-274 948.7 569 79.8
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.1e-272 943.0 569 79.4
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 2.4e-272 941.8 583 77.4
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 2.4e-272 941.8 570 77.9
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 5.4e-272 940.6 566 79.2
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 7.1e-272 940.3 571 77.9
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.2e-271 939.5 561 80.2
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 2.1e-271 938.7 567 77.2
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.7e-271 938.3 589 77.2
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 3.5e-271 937.9 571 78.6
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.3e-270 936.0 561 80.2
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 6.6e-270 933.7 536 82.8
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 8.7e-270 933.3 599 75.1
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.1e-269 932.9 571 77.4
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.5e-269 932.6 563 79.4
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.5e-269 931.8 567 76.7
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 4.3e-269 931.0 567 77.1
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 3.6e-268 927.9 561 77.4
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.4e-267 926.0 555 78.6
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.4e-267 925.2 561 77.5
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 7.6e-266 920.2 565 77.7
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 3.8e-265 917.9 561 76.5
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 4.9e-265 917.5 553 79.9
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 4.9e-265 917.5 581 74.7
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 6.4e-265 917.1 548 78.8
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.6e-263 912.5 548 78.8
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 1.6e-263 912.5 533 81.4
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 1.0e-262 909.8 535 80.4
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.3e-262 909.4 570 80.5
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 2.3e-262 908.7 548 78.6
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 3.0e-262 908.3 574 77.4
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 3.0e-262 908.3 549 76.7
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 3.9e-262 907.9 571 75.7
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.9e-261 905.6 570 73.9
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.9e-261 905.6 550 78.4
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 3.3e-261 904.8 548 77.0
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.4e-259 898.7 552 76.8
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 9.0e-259 896.7 549 79.1
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.6e-258 895.2 552 76.4
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.3e-257 892.9 595 75.3
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 6.5e-257 890.6 556 76.3
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 6.5e-257 890.6 558 76.7
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 8.4e-257 890.2 549 75.2
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.1e-256 889.8 545 76.3
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.4e-256 889.4 556 76.3
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 9.3e-256 886.7 545 76.0
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 2.1e-255 885.6 549 75.6
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.7e-255 885.2 545 76.3
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.7e-255 885.2 563 75.3
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 4.6e-255 884.4 517 81.0
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 6.7e-254 880.6 553 76.1
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 8.7e-254 880.2 554 78.0
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 3.3e-253 878.2 561 76.6
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 4.3e-253 877.9 546 75.6
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 5.7e-253 877.5 534 77.0
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 7.4e-253 877.1 545 75.6
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.1e-252 875.5 531 79.8
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.8e-249 864.8 536 79.1
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 3.2e-248 861.7 564 73.4
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 3.2e-248 861.7 564 73.4
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 5.5e-248 860.9 564 73.2
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 7.2e-248 860.5 564 73.4
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 9.3e-248 860.1 535 75.7
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.6e-247 859.4 534 76.2
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 2.1e-247 859.0 564 73.0
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 2.7e-247 858.6 534 75.8
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 2.7e-247 858.6 534 76.0
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 2.7e-247 858.6 534 75.8
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.7e-247 858.6 521 80.2
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 4.6e-247 857.8 547 74.8
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 6.1e-247 857.4 549 73.6
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 3.0e-246 855.1 573 72.6
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.3e-244 849.7 529 78.3
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 7.7e-242 840.5 549 73.8
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 6.5e-241 837.4 495 80.8
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.0e-238 828.6 518 75.7
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 5.1e-238 827.8 544 72.8
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 4.1e-235 818.1 517 74.5
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.3e-233 813.1 560 71.2
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 7.9e-231 803.9 538 73.4
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 6.7e-230 800.8 567 69.7
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.4e-229 798.1 481 80.7
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 3.0e-222 775.4 558 68.8
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 5.4e-195 684.9 561 61.7
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.7e-194 682.6 571 60.6
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.0e-193 680.6 543 62.8
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 3.0e-193 679.1 590 58.8
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.4e-190 670.2 416 78.8
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.1e-152 544.3 334 78.4
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.8e-137 493.8 324 73.1
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.7e-135 486.1 278 80.9
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 8.5e-132 474.9 359 66.6
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 6.7e-129 465.3 263 86.7
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 3.3e-120 436.4 528 48.9
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 3.3e-120 436.4 347 64.8
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.1e-110 402.9 294 69.4
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 6.3e-103 379.0 296 63.5
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 8.2e-103 378.6 217 76.0
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.0e-97 360.1 217 81.1
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 9.1e-94 348.6 270 64.4
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 8.6e-84 315.5 251 65.7
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 2.7e-77 293.9 198 73.7
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 1.3e-76 291.6 575 32.5
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.2e-73 279.6 201 68.7
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.7e-63 248.1 145 75.9
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.6e-61 241.5 439 32.6
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 4.4e-56 223.4 135 75.6
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 5.4e-54 216.5 228 48.2
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.1e-36 156.8 128 56.2
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 6.2e-34 149.8 101 64.4
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.0e-33 147.1 115 58.3
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-31 141.7 100 66.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.8e-31 140.6 106 60.4
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.0e-28 132.5 167 44.9
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 4.5e-24 117.1 116 53.4
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.6e-21 108.6 54 83.3
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 4.1e-17 94.0 53 83.0
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 6.1e-13 80.1 43 79.1
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.9e-11 75.1 61 60.7
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 1.3e-07 62.4 63 39.7
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 1.1e-06 59.3 77 28.6
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 1.1e-06 59.3 60 40.0
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 1.1e-06 59.3 77 28.6
Gohir.A04G051300 Gossypium hirsutum HOM05D000341 ORTHO05D001197 2.5e-06 58.2 97 34.0
FAN27G2732 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.2e-06 57.8 76 28.9
MBI15_g38537_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 3.2e-06 57.8 56 39.3
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 4.2e-06 57.4 111 31.5
MBI07_g28241_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D001197 4.2e-06 57.4 56 39.3
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 4.2e-06 57.4 58 36.2
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 4.2e-06 57.4 63 36.5
unitig_748.g7202 Utricularia gibba HOM05D000086 ORTHO05D001065 4.2e-06 57.4 55 45.5
Zm00001eb110240 Zea mays HOM05D000082 ORTHO05D000038 4.2e-06 57.4 57 38.6
Os07g0631200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 5.5e-06 57.0 59 40.7
TWI75G0506 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 9.4e-06 56.2 102 34.3


User provided reference genes

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