Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 1.8e-195 685.6 334 100.0
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 1.9e-192 675.6 334 98.2
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 1.3e-172 609.8 333 87.1
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 3.5e-170 601.7 336 85.7
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 1.1e-168 596.7 335 86.3
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.8e-158 562.8 312 86.9
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 3.2e-155 552.0 269 98.5
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 4.5e-141 505.0 333 72.4
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 2.9e-140 502.3 313 75.4
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 4.2e-139 498.4 335 73.1
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 2.7e-138 495.7 335 71.9
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 7.9e-138 494.2 330 72.4
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 1.8e-137 493.0 341 71.6
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 3.9e-137 491.9 313 74.8
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 4.3e-136 488.4 315 73.0
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 1.3e-135 486.9 327 70.9
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.6e-135 486.5 340 71.2
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 4.8e-135 485.0 335 69.9
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 6.3e-135 484.6 329 71.1
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 6.3e-135 484.6 337 70.6
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 2.4e-134 482.6 340 70.9
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 9.0e-134 480.7 331 70.7
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.2e-133 480.3 331 70.4
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 2.0e-133 479.6 329 70.5
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 3.4e-133 478.8 329 70.8
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 3.4e-133 478.8 340 70.6
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 3.4e-133 478.8 327 70.6
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 4.5e-133 478.4 335 69.3
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 5.8e-133 478.0 328 69.8
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 1.3e-132 476.9 293 76.5
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 2.2e-132 476.1 335 69.9
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 2.2e-132 476.1 332 69.3
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 3.8e-132 475.3 327 70.0
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 3.8e-132 475.3 328 71.6
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 5.0e-132 474.9 316 72.5
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 6.5e-132 474.6 337 68.8
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 6.5e-132 474.6 289 76.5
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 1.4e-131 473.4 329 68.4
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 1.4e-131 473.4 328 69.5
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 4.2e-131 471.9 333 69.7
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 4.2e-131 471.9 323 69.7
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 7.2e-131 471.1 333 69.1
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 7.2e-131 471.1 322 70.5
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 1.2e-130 470.3 320 71.2
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 1.2e-130 470.3 334 69.8
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 4.6e-130 468.4 328 67.7
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 1.0e-129 467.2 326 70.6
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 1.3e-129 466.8 344 66.3
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 5.1e-129 464.9 332 69.3
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 6.7e-129 464.5 311 71.7
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 2.5e-128 462.6 326 69.6
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 4.3e-128 461.8 315 70.8
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 2.8e-127 459.1 331 67.4
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 3.7e-127 458.8 331 70.7
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 4.5e-125 451.8 339 66.1
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 5.9e-125 451.4 317 70.0
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 5.9e-125 451.4 330 68.5
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 1.3e-124 450.3 334 67.7
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 1.3e-124 450.3 350 65.4
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 5.0e-124 448.4 329 68.4
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 8.5e-124 447.6 334 65.0
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 1.4e-123 446.8 328 65.9
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 2.1e-122 443.0 347 64.6
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 3.6e-122 442.2 304 71.4
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 3.6e-122 442.2 304 71.4
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 4.6e-122 441.8 338 66.0
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 6.7e-121 438.0 325 67.4
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 8.8e-121 437.6 304 70.7
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 8.8e-121 437.6 304 70.7
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.8e-121 437.6 280 73.2
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 1.1e-120 437.2 304 70.7
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 2.5e-120 436.0 317 68.1
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 9.7e-120 434.1 316 69.0
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 1.3e-119 433.7 307 71.0
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.2e-119 433.0 284 71.8
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 2.8e-119 432.6 288 72.9
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 8.2e-119 431.0 294 72.4
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 4.1e-118 428.7 268 76.1
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 4.1e-118 428.7 305 70.5
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 1.5e-117 426.8 331 65.3
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 2.0e-117 426.4 304 69.7
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 4.5e-117 425.2 291 72.2
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 2.9e-116 422.5 291 70.8
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 6.5e-116 421.4 332 65.7
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 6.5e-116 421.4 288 70.1
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 8.5e-116 421.0 332 65.7
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 1.4e-115 420.2 289 70.9
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 7.2e-115 417.9 246 79.3
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 1.6e-114 416.8 297 70.0
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 7.9e-114 414.5 232 84.9
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.5e-112 410.2 270 71.1
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 1.5e-112 410.2 340 62.9
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 1.8e-110 403.3 292 66.8
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 2.4e-110 402.9 326 60.7
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 4.5e-109 398.7 217 85.7
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 1.2e-106 390.6 235 77.0
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 8.8e-105 384.4 310 61.3
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.0e-100 370.9 317 60.3
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 1.0e-100 370.9 265 70.2
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 6.1e-90 335.1 321 54.8
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 1.8e-89 333.6 257 61.5
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 7.5e-88 328.2 183 84.2
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 7.5e-88 328.2 183 84.2
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 4.1e-86 322.4 304 52.6
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 1.4e-78 297.4 237 63.7
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 2.8e-74 283.1 197 70.1
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 3.0e-68 263.1 202 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 1.2e-66 257.7 189 63.0
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 3.2e-62 243.0 150 78.7
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 1.2e-56 224.6 160 65.6
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 2.8e-42 176.8 193 47.7
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 7.4e-35 152.1 138 55.1
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 2.6e-32 143.7 78 80.8
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 9.0e-25 118.6 140 46.4
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.9e-19 100.9 66 72.7
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 3.1e-09 67.0 50 64.0
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 5.9e-08 62.8 167 28.1
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 2.9e-07 60.5 176 29.0
Sed0001393 Sechium edule HOM05D006818 ORTHO05D372820 2.9e-07 60.5 205 30.2
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 3.8e-07 60.1 171 29.8
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 3.8e-07 60.1 170 28.8
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 3.8e-07 60.1 170 28.8
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 5.0e-07 59.7 170 28.8
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 1.1e-06 58.5 170 28.2
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 1.1e-06 58.5 170 28.2
Lalb_Chr13g0301021 Lupinus albus HOM05D003204 ORTHO05D003566 1.1e-06 58.5 167 28.7
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 1.4e-06 58.2 170 27.1
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 1.4e-06 58.2 174 29.3
C02p13620 Brassica napus HOM05D003204 ORTHO05D003566 1.9e-06 57.8 170 29.4
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 28.1
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 28.1
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 2.5e-06 57.4 170 27.6
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.8
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.2
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.8
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.8
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.2
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 5.5e-06 56.2 170 25.9
Eucgr.C00377 Eucalyptus grandis HOM05D003204 ORTHO05D003566 7.2e-06 55.8 167 28.1
PSO384G3133 Papaver somniferum HOM05D003204 ORTHO05D003566 7.2e-06 55.8 167 26.3


User provided reference genes

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