Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.8e-35 150.6 91 100.0
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 3.8e-34 147.9 91 97.8
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.5e-33 144.1 91 94.5
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.1e-30 136.3 91 87.9
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.9e-30 135.6 91 81.3
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.9e-30 135.6 91 92.3
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 4.3e-30 134.4 91 92.3
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.3e-29 132.9 90 90.0
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-29 132.1 91 89.0
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 6.2e-29 130.6 90 90.0
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 1.8e-28 129.0 91 89.0
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 3.1e-28 128.3 91 84.6
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 5.3e-28 127.5 91 85.7
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 4.9e-26 120.9 91 76.9
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 2.5e-25 118.6 91 74.7
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 4.2e-25 117.9 91 84.6
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.7e-24 115.2 90 72.2
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.8e-23 112.5 90 70.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 5.1e-23 110.9 91 81.3
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 5.1e-23 110.9 94 67.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.1e-22 109.8 90 68.9
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.1e-22 109.8 91 75.8
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 1.1e-22 109.8 91 75.8
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-22 109.0 90 68.9
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.5e-22 108.6 91 68.1
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 3.3e-22 108.2 91 67.0
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 3.3e-22 108.2 90 78.9
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 3.3e-22 108.2 90 67.8
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 4.3e-22 107.8 90 64.4
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 5.7e-22 107.5 96 65.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.6e-21 105.9 91 65.9
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-21 105.9 91 65.9
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-21 105.9 91 65.9
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.6e-21 105.9 90 65.6
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.8e-21 105.1 91 69.2
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.8e-21 105.1 90 77.8
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 2.8e-21 105.1 90 77.8
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.7e-21 104.8 91 64.8
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 3.7e-21 104.8 90 66.7
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 4.8e-21 104.4 91 64.8
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.3e-21 104.0 91 65.9
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 6.3e-21 104.0 91 75.8
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.8e-20 102.4 90 64.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.8e-20 102.4 96 60.4
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 5.3e-20 100.9 91 72.5
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 6.9e-20 100.5 90 65.6
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 6.9e-20 100.5 90 64.4
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 9.0e-20 100.1 91 75.8
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 9.0e-20 100.1 90 70.0
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.2e-19 99.8 90 64.4
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.5e-19 99.4 91 74.7
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.0e-19 99.0 91 63.7
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 3.4e-19 98.2 91 75.8
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 4.5e-19 97.8 90 63.3
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 4.5e-19 97.8 90 73.3
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 4.5e-19 97.8 91 74.7
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.5e-19 97.8 91 73.6
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 4.5e-19 97.8 90 73.3
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 5.9e-19 97.4 90 63.3
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 5.9e-19 97.4 54 92.6
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.0e-18 96.7 90 63.3
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.0e-18 96.7 91 74.7
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.0e-18 96.7 60 83.3
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.3e-18 96.3 53 92.5
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.7e-18 95.9 90 60.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.7e-18 95.9 89 60.7
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 2.2e-18 95.5 91 69.2
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.9e-18 95.1 91 72.5
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.9e-18 95.1 90 62.2
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 5.0e-18 94.4 90 63.3
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 5.0e-18 94.4 90 63.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 5.0e-18 94.4 90 71.1
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 6.5e-18 94.0 90 74.4
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 6.5e-18 94.0 91 71.4
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 8.5e-18 93.6 89 68.5
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 8.5e-18 93.6 91 70.3
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 8.5e-18 93.6 91 72.5
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 8.5e-18 93.6 90 72.2
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 8.5e-18 93.6 90 72.2
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.4e-17 92.8 91 70.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.4e-17 92.8 91 71.4
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.4e-17 92.8 57 82.5
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.4e-17 92.8 93 60.2
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.5e-17 92.0 90 72.2
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 2.5e-17 92.0 90 72.2
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 4.2e-17 91.3 90 66.7
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 5.5e-17 90.9 60 78.3
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 5.5e-17 90.9 60 78.3
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 5.5e-17 90.9 60 78.3
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 5.5e-17 90.9 60 78.3
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.6e-16 89.4 91 65.9
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.6e-16 89.4 89 67.4
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.6e-16 89.4 89 67.4
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.6e-16 89.4 56 83.9
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.6e-16 89.4 53 86.8
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 2.1e-16 89.0 89 66.3
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 2.1e-16 89.0 54 85.2
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.1e-16 89.0 92 68.5
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.1e-16 89.0 54 87.0
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.1e-16 89.0 53 88.7
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 3.6e-16 88.2 91 70.3
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 3.6e-16 88.2 90 68.9
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.6e-16 88.2 92 66.3
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.6e-16 87.8 90 57.8
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 4.6e-16 87.8 54 85.2
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.6e-16 87.8 55 83.6
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 4.6e-16 87.8 52 84.6
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 6.1e-16 87.4 89 53.9
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 6.1e-16 87.4 53 84.9
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 7.9e-16 87.0 53 86.8
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 7.9e-16 87.0 52 86.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.4e-15 86.3 52 88.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.8e-15 85.9 54 83.3
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 2.3e-15 85.5 53 84.9
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 5.1e-15 84.3 92 66.3
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 6.7e-15 84.0 91 65.9
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 6.7e-15 84.0 48 89.6
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 8.8e-15 83.6 53 81.1
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.1e-14 83.2 49 87.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.1e-14 83.2 90 58.9
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 3.3e-14 81.6 93 53.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 5.7e-14 80.9 93 53.8
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 7.4e-14 80.5 52 80.8
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 9.7e-14 80.1 52 82.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.7e-13 79.3 46 89.1
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.7e-13 79.3 91 60.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.7e-13 78.2 90 55.6
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 8.2e-13 77.0 59 66.1
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.5e-11 72.8 59 59.3
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 1.1e-09 66.6 80 53.8
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.4e-09 66.2 43 83.7
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 2.7e-08 62.0 83 47.0
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.3e-07 58.9 55 58.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.0e-07 58.5 63 55.6
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.0e-07 58.5 91 53.8
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.1e-06 56.6 40 67.5
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.5e-06 56.2 55 58.2
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 2.0e-06 55.8 53 56.6
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.6e-06 55.5 53 56.6


User provided reference genes

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