Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1433.7 716 100.0
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1406.7 716 98.3
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1391.3 716 97.1
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1314.7 716 91.2
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1297.3 712 90.2
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 0.0e+00 1248.0 738 86.2
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 0.0e+00 1213.4 671 90.2
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1151.0 716 77.9
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1132.1 716 77.0
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1124.4 716 76.0
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1123.6 716 75.6
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1121.7 716 74.9
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1117.8 713 76.2
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1112.8 710 76.1
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1111.3 716 75.6
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1110.5 716 76.0
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1109.4 716 75.3
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1107.0 703 76.5
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1103.2 716 76.3
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1101.3 716 74.4
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1101.3 702 75.6
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1100.1 702 74.8
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 0.0e+00 1097.8 702 76.2
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1096.6 703 75.8
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 0.0e+00 1095.9 700 76.4
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 0.0e+00 1094.7 702 77.1
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1094.7 697 76.0
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1094.7 709 75.3
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 716 74.2
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1092.8 716 74.0
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1089.3 716 73.7
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1088.9 716 73.7
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1088.2 711 75.2
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1087.8 711 75.2
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1085.5 711 74.7
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1083.9 711 75.5
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1082.0 703 73.8
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 0.0e+00 1075.8 717 74.1
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 4.9e-312 1074.7 702 74.4
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 4.4e-311 1070.8 703 73.4
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 3.7e-310 1067.8 721 73.5
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.2e-308 1062.8 701 72.9
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 2.7e-308 1061.6 711 72.7
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.0e-307 1059.7 717 70.6
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.3e-307 1059.3 734 71.0
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 3.8e-307 1057.7 716 72.2
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 6.5e-307 1057.0 698 73.2
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 8.5e-307 1056.6 711 71.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 1.4e-304 1049.3 711 72.2
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.8e-304 1048.9 716 71.8
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.5e-303 1045.8 706 72.2
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 1.5e-303 1045.8 710 72.8
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 7.5e-303 1043.5 750 69.7
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 1.1e-301 1039.6 708 72.5
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 5.4e-301 1037.3 707 71.7
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 7.0e-301 1036.9 708 72.9
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 7.0e-301 1036.9 708 71.9
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 9.1e-301 1036.6 711 71.2
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.2e-300 1036.2 801 65.9
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 3.5e-300 1034.6 702 72.6
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 8.6e-299 1030.0 710 71.8
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 8.6e-299 1030.0 714 71.0
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 1.1e-298 1029.6 708 71.3
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 5.5e-298 1027.3 714 70.3
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 2.1e-297 1025.4 704 71.9
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 9.8e-295 1016.5 703 70.7
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 4.9e-294 1014.2 703 70.6
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.3e-294 1013.8 730 70.0
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 1.0e-291 1006.5 694 71.5
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 8.6e-291 1003.4 697 71.2
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 697 71.0
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 2.8e-289 998.4 697 70.9
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 3.6e-289 998.0 692 70.1
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.1e-288 995.0 693 71.0
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 5.2e-288 994.2 692 71.0
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.5e-287 992.6 700 69.3
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 7.5e-287 990.3 706 69.3
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.3e-286 989.6 698 70.5
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 2.4e-285 985.3 693 70.4
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 3.2e-285 984.9 687 69.6
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 9.2e-285 983.4 718 68.1
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 3.9e-283 978.0 698 70.2
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 6.6e-283 977.2 787 62.6
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 6.6e-283 977.2 694 69.7
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 2.3e-280 968.8 750 64.4
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 5.6e-274 947.6 710 66.6
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 4.4e-271 937.9 697 66.6
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 4.3e-266 921.4 717 65.8
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 2.8e-265 918.7 711 66.1
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 4.0e-264 914.8 603 73.5
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 8.9e-264 913.7 588 75.9
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 3.8e-262 908.3 720 63.6
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.5e-260 901.7 562 76.5
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 8.7e-259 897.1 724 63.8
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 1.1e-258 896.7 675 66.5
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 2.3e-251 872.5 709 61.6
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.3e-235 819.3 535 74.4
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 1.2e-223 780.4 527 71.9
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 4.3e-218 761.9 694 55.9
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 6.3e-209 731.5 699 54.2
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 7.7e-207 724.5 742 55.1
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 2.1e-188 663.3 697 49.9
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 2.2e-185 653.3 871 43.5
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 6.1e-180 635.2 451 68.1
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 3.0e-174 616.3 839 43.3
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 3.5e-167 592.8 694 46.8
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.0e-162 577.0 388 70.1
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.7e-161 573.9 488 58.4
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 3.3e-149 533.1 751 43.1
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 2.4e-147 526.9 739 42.9
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.4e-128 464.5 757 38.7
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 3.2e-128 463.4 702 39.0
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 3.5e-127 459.9 812 36.7
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 1.3e-121 441.4 338 69.2
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.3e-116 424.9 303 71.0
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.9e-104 384.4 347 58.2
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.7e-76 291.6 270 56.3
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 3.1e-75 287.3 201 69.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 2.4e-67 261.2 188 70.2
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.4e-59 234.6 164 68.3
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.8e-54 218.4 153 70.6
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 8.1e-39 166.4 115 70.4
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 8.9e-38 162.9 102 76.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 5.4e-35 153.7 180 51.1
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 4.4e-29 134.0 112 55.4
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.9e-27 128.6 100 67.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.2e-26 125.9 96 62.5
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.4e-22 112.5 148 46.6
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 2.0e-21 108.6 61 80.3
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.3e-17 95.9 81 59.3
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 6.2e-15 87.0 59 67.8
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 3.4e-13 81.3 63 61.9
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 4.9e-12 77.4 46 71.7
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 6.0e-10 70.5 45 71.1
CAN.G1017.2 Capsicum annuum HOM05D009823 ORTHO05D011888 1.0e-09 69.7 58 67.2
CAN.G734.4 Capsicum annuum HOM05D009823 ORTHO05D011888 1.9e-08 65.5 59 62.7
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 9.6e-08 63.2 38 73.7


User provided reference genes

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