Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065960.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 5.7e-84 314.3 169 100.0
Sopen11g025700 Solanum pennellii HOM05D004477 ORTHO05D005615 2.4e-42 176.0 151 72.2
Solyc01g007250.4 Solanum lycopersicum HOM05D004477 ORTHO05D005615 5.2e-29 131.7 80 90.0
Sopen01g003240 Solanum pennellii HOM05D004477 ORTHO05D005615 3.2e-26 122.5 65 100.0
PGSC0003DMG400000394 Solanum tuberosum HOM05D004477 ORTHO05D005615 3.2e-26 122.5 65 100.0
PGSC0003DMG400016389 Solanum tuberosum HOM05D004477 ORTHO05D005615 3.2e-26 122.5 65 100.0
Nitab4.5_0000624g0090 Nicotiana tabacum HOM05D004477 ORTHO05D005615 2.7e-25 119.4 66 95.5
Nitab4.5_0021326g0010 Nicotiana tabacum HOM05D004477 ORTHO05D005615 4.6e-25 118.6 65 96.9
CAN.G574.29 Capsicum annuum HOM05D004477 ORTHO05D005615 1.7e-24 116.7 66 92.4
Oeu049664.1 Olea europaea HOM05D004477 ORTHO05D005615 3.0e-24 115.9 66 93.9
SalBow7G4685 Salvia bowleyana HOM05D004477 ORTHO05D005615 5.0e-24 115.2 67 91.0
ClCG01G007690 Citrullus lanatus HOM05D004477 ORTHO05D005615 8.6e-24 114.4 68 89.7
MELO3C005127.2 Cucumis melo HOM05D004477 ORTHO05D005615 8.6e-24 114.4 65 93.8
CsaV3_5G024730 Cucumis sativus L. HOM05D004477 ORTHO05D005615 8.6e-24 114.4 65 93.8
MSTRG.2896 Avicennia marina HOM05D004477 ORTHO05D005615 1.1e-23 114.0 65 95.4
Ca_14282_v3 Cicer arietinum L. HOM05D004477 ORTHO05D005615 1.9e-23 113.2 65 93.8
Glyma.11G152600 Glycine max HOM05D004477 ORTHO05D005615 1.9e-23 113.2 65 93.8
Manes.11G003480 Manihot esculenta HOM05D004477 ORTHO05D005615 1.9e-23 113.2 65 93.8
CDE05G2398 Ceratophyllum demersum HOM05D004477 ORTHO05D005615 2.5e-23 112.8 65 92.3
Nn7g36505 Nelumbo nucifera HOM05D004477 ORTHO05D005615 2.5e-23 112.8 65 93.8
arahy.Tifrunner.gnm1.ann1.5IKX6D Arachis hypogaea HOM05D004477 ORTHO05D005615 3.3e-23 112.5 65 92.3
arahy.Tifrunner.gnm1.ann1.8LX4B2 Arachis hypogaea HOM05D004477 ORTHO05D005615 3.3e-23 112.5 65 92.3
arahy.Tifrunner.gnm1.ann1.95EFUZ Arachis hypogaea HOM05D004477 ORTHO05D005615 3.3e-23 112.5 65 92.3
arahy.Tifrunner.gnm1.ann1.T70L3V Arachis hypogaea HOM05D004477 ORTHO05D005615 3.3e-23 112.5 65 92.3
AUR62026831 Chenopodium quinoa HOM05D004477 ORTHO05D005615 3.3e-23 112.5 65 92.3
AUR62037222 Chenopodium quinoa HOM05D004477 ORTHO05D005615 3.3e-23 112.5 65 92.3
Sc10g0004300 Simmondsia chinensis HOM05D004477 ORTHO05D005615 4.3e-23 112.1 65 92.3
Thecc.10G006900 Theobroma cacao HOM05D004477 ORTHO05D005615 4.3e-23 112.1 65 92.3
VMungo1080G0371 Vigna mungo HOM05D004477 ORTHO05D005615 4.3e-23 112.1 65 92.3
GSVIVG01000834001 Vitis vinifera HOM05D004477 ORTHO05D005615 4.3e-23 112.1 65 92.3
Ciclev10032276m.g Citrus clementina HOM05D004477 ORTHO05D005615 5.6e-23 111.7 65 92.3
Dinv32044 Davidia involucrata HOM05D004477 ORTHO05D005615 5.6e-23 111.7 65 92.3
TWI15G0640 Tripterygium wilfordii HOM05D004477 ORTHO05D005615 5.6e-23 111.7 65 93.8
EL10Ac2g02848 Beta vulgaris HOM05D004477 ORTHO05D005615 7.3e-23 111.3 65 90.8
Lalb_Chr20g0109051 Lupinus albus HOM05D004477 ORTHO05D005615 7.3e-23 111.3 65 90.8
Sed0015395 Sechium edule HOM05D004477 ORTHO05D005615 7.3e-23 111.3 65 92.3
Atru.chr3.2871 Acer truncatum HOM05D004477 ORTHO05D005615 9.5e-23 110.9 65 92.3
Cpa.g.sc51.97 Carica papaya HOM05D004477 ORTHO05D005615 9.5e-23 110.9 64 93.8
Glyma.04G139900 Glycine max HOM05D004477 ORTHO05D005615 9.5e-23 110.9 65 92.3
vmacro13733 Vaccinium macrocarpon HOM05D004477 ORTHO05D005615 9.5e-23 110.9 65 90.8
Actinidia06268 Actinidia chinensis HOM05D004477 ORTHO05D005615 1.2e-22 110.5 65 89.2
Gohir.A06G159200 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.2e-22 110.5 65 90.8
Gohir.D12G108500 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.2e-22 110.5 65 90.8
Gorai.010G192500 Gossypium raimondii HOM05D004477 ORTHO05D005615 1.2e-22 110.5 65 90.8
Potri.001G024500 Populus trichocarpa HOM05D004477 ORTHO05D005615 1.2e-22 110.5 65 92.3
Potri.003G201100 Populus trichocarpa HOM05D004477 ORTHO05D005615 1.2e-22 110.5 65 92.3
Sabra03G0148700 Salix brachista HOM05D004477 ORTHO05D005615 1.2e-22 110.5 65 92.3
TAR623G1431 Trochodendron aralioides HOM05D004477 ORTHO05D005615 1.2e-22 110.5 65 90.8
CSS0003663 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 1.6e-22 110.2 65 89.2
CSS0028927 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 1.6e-22 110.2 65 89.2
HanXRQChr15g0469031 Helianthus annuus HOM05D004477 ORTHO05D005615 1.6e-22 110.2 65 89.2
Lsat_1_v5_gn_5_69441 Lactuca sativa HOM05D004477 ORTHO05D005615 1.6e-22 110.2 65 89.2
Lj3g0011019 Lotus japonicus HOM05D004477 ORTHO05D005615 1.6e-22 110.2 65 92.3
Cc06_g06430 Coffea canephora HOM05D004477 ORTHO05D005615 2.1e-22 109.8 65 87.7
Duzib128G1167 Durio zibethinus HOM05D004477 ORTHO05D005615 2.1e-22 109.8 65 89.2
Eucgr.G03251 Eucalyptus grandis HOM05D004477 ORTHO05D005615 2.8e-22 109.4 65 89.2
Phvul.005G031000 Phaseolus vulgaris HOM05D004477 ORTHO05D005615 3.6e-22 109.0 65 90.8
COL.COLO4_25826 Corchorus olitorius HOM05D004477 ORTHO05D005615 4.7e-22 108.6 65 89.2
THA.LOC104800270 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 4.7e-22 108.6 65 87.7
THA.LOC104824184 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 4.7e-22 108.6 65 87.7
Gohir.D06G165100 Gossypium hirsutum HOM05D004477 ORTHO05D005615 6.2e-22 108.2 65 89.2
Psat4g000640 Pisum sativum HOM05D004477 ORTHO05D005615 8.0e-22 107.8 65 87.7
Psat5g217400 Pisum sativum HOM05D004477 ORTHO05D005615 8.0e-22 107.8 65 87.7
Hund13333 Selenicereus undatus HOM05D004477 ORTHO05D005615 1.4e-21 107.1 65 87.7
Ah.03g137500 Amaranthus hybridus HOM05D004477 ORTHO05D005615 1.8e-21 106.7 65 89.2
Aqoxy7G00557 Aquilegia oxysepala HOM05D004477 ORTHO05D005615 1.8e-21 106.7 64 89.1
Cfa019574 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.3e-21 106.3 65 87.7
Haze_09336 Corylus avellana HOM05D004477 ORTHO05D005615 2.3e-21 106.3 65 87.7
MD05G1030400 Malus domestica HOM05D004477 ORTHO05D005615 3.1e-21 105.9 65 87.7
MD10G1031800 Malus domestica HOM05D004477 ORTHO05D005615 3.1e-21 105.9 65 87.7
CiPaw.11G047300 Carya illinoinensis HOM05D004477 ORTHO05D005615 4.0e-21 105.5 64 87.5
Prupe.2G030400 Prunus persica HOM05D004477 ORTHO05D005615 4.0e-21 105.5 65 87.7
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 4.0e-21 105.5 65 87.7
Haze_07686 Corylus avellana HOM05D004477 ORTHO05D005615 5.2e-21 105.1 65 86.2
ECA233G2007 Erigeron canadensis HOM05D004477 ORTHO05D005615 5.2e-21 105.1 65 86.2
Prupe.8G084800 Prunus persica HOM05D004477 ORTHO05D005615 5.2e-21 105.1 65 86.2
Aa31LG2G960 Aethionema arabicum HOM05D004477 ORTHO05D005615 6.8e-21 104.8 65 81.5
ATR0307G081 Amborella trichopoda HOM05D004477 ORTHO05D005615 6.8e-21 104.8 65 87.7
Cfa019303 Carpinus fangiana HOM05D004477 ORTHO05D005615 6.8e-21 104.8 65 86.2
Psat4g015320 Pisum sativum HOM05D004477 ORTHO05D005615 6.8e-21 104.8 65 84.6
QL04p014055 Quercus lobata HOM05D004477 ORTHO05D005615 6.8e-21 104.8 65 84.6
Pp3c25_4340 Physcomitrium patens HOM05D004477 ORTHO05D005615 8.9e-21 104.4 64 87.5
Pp3c25_4350 Physcomitrium patens HOM05D004477 ORTHO05D005615 8.9e-21 104.4 64 87.5
Pp3c25_4370 Physcomitrium patens HOM05D004477 ORTHO05D005615 8.9e-21 104.4 64 87.5
TAR633G1412 Trochodendron aralioides HOM05D004477 ORTHO05D005615 1.2e-20 104.0 71 83.1
Mapoly0031s0129 Marchantia polymorpha HOM05D004477 ORTHO05D005615 1.5e-20 103.6 65 87.7
Medtr3g019370 Medicago truncatula HOM05D004477 ORTHO05D005615 1.5e-20 103.6 65 86.2
HPP92_017907 Vanilla planifolia HOM05D004477 ORTHO05D005615 1.5e-20 103.6 65 87.7
AL2G11360 Arabidopsis lyrata HOM05D004477 ORTHO05D005615 3.4e-20 102.4 65 81.5
BcaB07g31410 Brassica carinata HOM05D004477 ORTHO05D005615 3.4e-20 102.4 65 83.1
Sp2g00900 Schrenkiella parvula HOM05D004477 ORTHO05D005615 3.4e-20 102.4 65 83.1
CARHR047410 Cardamine hirsuta HOM05D004477 ORTHO05D005615 4.4e-20 102.1 65 81.5
PGR031G2712 Punica granatum HOM05D004477 ORTHO05D005615 4.4e-20 102.1 65 84.6
BcaC04g22503 Brassica carinata HOM05D004477 ORTHO05D005615 5.8e-20 101.7 65 81.5
A09p15310 Brassica napus HOM05D004477 ORTHO05D005615 5.8e-20 101.7 65 81.5
C09p18580 Brassica napus HOM05D004477 ORTHO05D005615 5.8e-20 101.7 65 81.5
BolC9t54754H Brassica oleracea HOM05D004477 ORTHO05D005615 5.8e-20 101.7 65 81.5
BraA09t37176Z Brassica rapa HOM05D004477 ORTHO05D005615 5.8e-20 101.7 65 81.5
Migut.H00453 Erythranthe guttata HOM05D004477 ORTHO05D005615 5.8e-20 101.7 65 83.1
DCAR_030970 Daucus carota HOM05D004477 ORTHO05D005615 7.5e-20 101.3 65 84.6
Thhalv10023618m.g Eutrema salsugineum HOM05D004477 ORTHO05D005615 9.8e-20 100.9 65 80.0
Prupe.2G030500 Prunus persica HOM05D004477 ORTHO05D005615 1.3e-19 100.5 59 89.8
SMO118G0432 Selaginella moellendorffii HOM05D004477 ORTHO05D005615 1.3e-19 100.5 65 80.0
Prupe.8G084000 Prunus persica HOM05D004477 ORTHO05D005615 1.7e-19 100.1 67 80.6
Carub.0002s0106 Capsella rubella HOM05D004477 ORTHO05D005615 2.9e-19 99.4 65 81.5
CANSAT80G2023 Cannabis sativa HOM05D004477 ORTHO05D005615 3.7e-19 99.0 65 83.1
Prupe.I005600 Prunus persica HOM05D004477 ORTHO05D005615 8.3e-19 97.8 67 79.1
PSO017G0587 Papaver somniferum HOM05D004477 ORTHO05D005615 1.1e-18 97.4 61 83.6
CBR_g37218 Chara braunii HOM05D004477 ORTHO05D005615 4.1e-18 95.5 61 83.6
TPR.G3866 Trifolium pratense HOM05D004477 ORTHO05D005615 4.1e-18 95.5 65 80.0
PSO478G1616 Papaver somniferum HOM05D004477 ORTHO05D005615 5.4e-18 95.1 61 82.0
TPR.G771 Trifolium pratense HOM05D004477 ORTHO05D005615 5.4e-18 95.1 65 80.0
BcaB07g31550 Brassica carinata HOM05D004477 ORTHO05D005615 1.2e-17 94.0 65 76.9
Sed0014614 Sechium edule HOM05D004477 ORTHO05D005615 2.1e-17 93.2 64 79.7
Cre10.g454100 Chlamydomonas reinhardtii HOM05D004477 ORTHO05D005615 2.7e-17 92.8 65 73.8
AT1G63780 Arabidopsis thaliana HOM05D004477 ORTHO05D005615 7.8e-17 91.3 65 73.8
RcHm_v2.0_Chr1g0321121 Rosa chinensis HOM05D004477 ORTHO05D005615 1.0e-16 90.9 65 76.9
FAN03G1284 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.7e-16 90.1 65 76.9
FAN10G1920 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.7e-16 90.1 65 76.9
FvH4_7g02470 Fragaria vesca HOM05D004477 ORTHO05D005615 2.3e-16 89.7 65 76.9
FAN06G1855 Fragaria x ananassa HOM05D004477 ORTHO05D005615 2.3e-16 89.7 65 76.9
Zm00001eb226560 Zea mays HOM05D004477 ORTHO05D005615 2.3e-16 89.7 62 77.4
Gorai.008G117500 Gossypium raimondii HOM05D004477 ORTHO05D005615 6.6e-16 88.2 51 90.2
MCO12G196 Micromonas commoda HOM05D004477 ORTHO05D005615 1.1e-15 87.4 65 75.4
PRCOL_00000378 Prasinoderma coloniale HOM05D004477 ORTHO05D005615 2.5e-15 86.3 64 75.0
Prupe.4G022800 Prunus persica HOM05D004477 ORTHO05D005615 9.5e-15 84.3 62 75.8
SGA_v2.0_scaffold289G47250 Striga asiatica HOM05D004477 ORTHO05D005615 9.5e-15 84.3 72 68.1
FvH4_7g04360 Fragaria vesca HOM05D004477 ORTHO05D005615 3.4e-12 75.9 65 64.6
Rhsim07G0063100 Rhododendron simsii HOM05D004477 ORTHO05D005615 5.8e-12 75.1 65 66.2
FAN10G2896 Fragaria x ananassa HOM05D004477 ORTHO05D005615 6.4e-11 71.6 65 60.0
SalBow5G3206 Salvia bowleyana HOM05D031228 ORTHO05D030301 8.3e-11 71.2 89 55.1
Peaxi162Scf01810g00112 Petunia axillaris HOM05D004477 ORTHO05D005615 2.4e-10 69.7 58 70.7
Lj7A582G32 Lonicera japonica HOM05D004477 ORTHO05D005615 1.3e-08 63.9 58 69.0
SGA_v2.0_scaffold15G07263 Striga asiatica HOM05D004477 ORTHO05D005615 3.0e-08 62.8 36 91.7
Os08g0155000 Oryza sativa ssp. japonica HOM05D004477 ORTHO05D005615 1.5e-07 60.5 53 67.9
Peaxi162Scf00211g01210 Petunia axillaris HOM05D004477 ORTHO05D005615 3.3e-07 59.3 40 77.5
SGA_v2.0_scaffold162G37895 Striga asiatica HOM05D004477 ORTHO05D005615 1.2e-06 57.4 55 60.0
SGA_v2.0_scaffold20G09066 Striga asiatica HOM05D004477 ORTHO05D005615 3.6e-06 55.8 55 58.2


User provided reference genes

Program Settings