Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 7.6e-122 440.7 245 100.0
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 4.9e-113 411.4 245 94.3
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 6.1e-95 351.3 249 84.7
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 1.9e-93 346.3 233 86.3
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 3.2e-80 302.4 254 72.0
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 6.1e-79 298.1 253 72.3
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 2.5e-72 276.2 245 64.5
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 3.2e-72 275.8 266 62.0
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.1e-71 273.1 250 59.6
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 2.1e-71 273.1 252 66.3
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 8.8e-70 267.7 257 64.6
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 3.3e-69 265.8 249 64.7
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 7.5e-69 264.6 253 59.3
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.8e-68 261.9 243 63.4
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 8.2e-68 261.2 251 61.0
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 1.1e-67 260.8 253 57.7
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 7.0e-67 258.1 249 63.1
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 9.1e-67 257.7 245 60.8
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.1e-67 257.7 246 61.8
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 9.1e-67 257.7 255 62.4
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 9.1e-67 257.7 251 62.2
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 1.2e-66 257.3 239 64.9
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 2.0e-66 256.5 257 61.5
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 2.0e-66 256.5 253 57.3
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 2.0e-66 256.5 252 54.8
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 2.0e-66 256.5 249 59.8
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.7e-66 256.1 246 61.8
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 3.5e-66 255.8 251 59.0
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 5.9e-66 255.0 246 61.4
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 5.9e-66 255.0 245 60.4
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 5.9e-66 255.0 252 61.9
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 7.7e-66 254.6 250 60.8
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 1.3e-65 253.8 251 57.8
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 1.3e-65 253.8 251 63.3
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 2.2e-65 253.1 253 59.7
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 3.8e-65 252.3 250 58.4
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 8.5e-65 251.1 252 62.7
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 8.5e-65 251.1 251 61.8
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 8.5e-65 251.1 251 53.0
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 1.5e-64 250.4 250 62.8
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 2.5e-64 249.6 250 58.8
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 2.5e-64 249.6 251 58.2
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 4.2e-64 248.8 250 60.0
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 7.2e-64 248.1 250 59.2
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 9.4e-64 247.7 248 58.9
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 1.6e-63 246.9 249 62.2
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 3.6e-63 245.7 249 59.8
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 6.1e-63 245.0 250 59.2
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.4e-62 243.8 247 59.5
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 1.4e-62 243.8 247 58.7
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 1.8e-62 243.4 248 58.1
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 2.3e-62 243.0 247 59.9
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 3.0e-62 242.7 250 60.0
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 4.0e-62 242.3 281 53.0
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 8.8e-62 241.1 246 61.8
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 1.2e-61 240.7 251 58.6
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.5e-61 240.4 250 58.8
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 1.5e-61 240.4 256 61.3
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 2.6e-61 239.6 248 59.7
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 4.4e-61 238.8 251 59.0
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.4e-61 238.8 250 58.8
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 9.8e-61 237.7 251 58.6
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 1.3e-60 237.3 243 57.6
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 1.3e-60 237.3 251 58.6
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.7e-60 236.9 244 54.1
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 2.8e-60 236.1 249 59.8
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 3.7e-60 235.7 250 58.0
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 4.8e-60 235.3 251 58.2
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 4.8e-60 235.3 251 58.2
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 8.3e-60 234.6 248 58.1
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 1.1e-59 234.2 253 60.9
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 1.4e-59 233.8 248 58.1
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 4.1e-59 232.3 259 56.4
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.1e-59 232.3 248 56.9
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 7.7e-58 228.0 248 57.3
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 1.0e-57 227.6 248 57.3
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 1.3e-57 227.3 251 56.2
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 1.7e-57 226.9 243 53.5
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 2.9e-57 226.1 252 61.1
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 3.8e-57 225.7 249 55.4
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 5.5e-56 221.9 256 52.3
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 7.2e-56 221.5 240 57.5
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 9.5e-56 221.1 252 53.2
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 2.8e-55 219.5 225 56.0
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 4.7e-55 218.8 236 58.1
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 1.1e-51 207.6 244 55.7
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 3.1e-51 206.1 219 61.2
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 4.1e-51 205.7 205 59.0
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 8.6e-49 198.0 220 56.4
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 7.3e-48 194.9 247 52.2
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 6.1e-47 191.8 241 51.0
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 1.0e-46 191.0 251 47.0
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.0e-45 186.8 231 48.1
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 4.4e-45 185.7 184 52.7
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 7.5e-45 184.9 259 43.2
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.7e-44 183.7 249 49.8
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 1.1e-43 181.0 185 54.6
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 3.2e-43 179.5 184 54.9
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 7.0e-43 178.3 184 53.3
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.8e-39 166.4 155 61.9
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 1.4e-38 164.1 246 42.3
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 4.4e-37 159.1 271 41.0
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 6.4e-36 155.2 258 38.0
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 2.0e-34 150.2 153 53.6
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.3e-33 147.5 151 53.6
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.8e-31 139.8 161 55.3
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 2.2e-28 130.2 246 37.8
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 8.6e-25 118.2 97 63.9
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 8.6e-25 118.2 97 63.9
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.1e-24 117.9 133 51.1
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 5.2e-22 109.0 162 43.2
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 8.9e-22 108.2 234 36.3
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.3e-20 104.4 220 38.2
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 4.9e-20 102.4 156 42.3
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 4.3e-16 89.4 330 26.7
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.3e-12 77.8 126 40.5
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 1.3e-12 77.8 57 66.7
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 2.7e-10 70.1 45 66.7
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 6.6e-09 65.5 99 42.4
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 2.8e-07 60.1 84 41.7
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 2.4e-06 57.0 59 44.1
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 2.4e-06 57.0 58 48.3
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 3.1e-06 56.6 59 44.1
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 4.0e-06 56.2 59 42.4
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 4.0e-06 56.2 57 47.4
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 47.5
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 42.4
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 5.3e-06 55.8 59 42.4
Gohir.A12G052500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 6.9e-06 55.5 59 44.1
Gorai.008G054400 Gossypium raimondii HOM05D005384 ORTHO05D006477 6.9e-06 55.5 59 44.1
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 6.9e-06 55.5 59 44.1
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 9.0e-06 55.1 59 47.5
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 9.0e-06 55.1 59 47.5
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 9.0e-06 55.1 59 47.5
Gohir.D12G051100 Gossypium hirsutum HOM05D005384 ORTHO05D006477 9.0e-06 55.1 58 44.8
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 9.0e-06 55.1 59 44.1


User provided reference genes

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