Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 0.0e+00 1199.9 665 100.0
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 0.0e+00 1179.9 665 98.3
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 0.0e+00 1097.4 655 91.5
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 0.0e+00 1094.7 655 90.8
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 0.0e+00 1083.2 665 89.8
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.2e-293 1011.9 665 84.8
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 5.9e-270 934.1 654 77.8
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.8e-267 925.2 677 74.7
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 4.7e-267 924.5 630 78.7
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.4e-266 922.9 634 77.6
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.3e-266 922.2 681 73.7
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.3e-261 906.4 645 78.6
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 5.2e-258 894.4 648 74.5
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.7e-256 888.3 648 74.4
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.4e-255 885.6 644 73.6
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.3e-252 875.2 646 75.2
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 5.6e-252 874.4 651 74.7
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 6.8e-250 867.5 667 70.8
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.3e-248 863.2 656 72.6
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 8.3e-248 860.5 667 70.5
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 2.4e-247 859.0 650 72.3
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 5.4e-247 857.8 667 71.7
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 3.5e-246 855.1 605 77.5
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.0e-245 853.6 636 72.5
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.7e-245 852.8 621 73.9
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 8.6e-245 850.5 645 71.8
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.6e-245 850.5 636 72.3
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.5e-244 849.0 634 72.4
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 3.3e-244 848.6 625 73.0
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 3.3e-244 848.6 751 64.8
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.3e-244 847.4 474 96.0
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 3.6e-243 845.1 621 73.3
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.4e-241 838.2 640 71.7
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 4.1e-239 831.6 625 71.7
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 7.1e-239 830.9 671 69.3
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.6e-238 829.7 624 72.3
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.1e-238 829.3 636 71.2
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 2.7e-238 828.9 635 72.3
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 3.5e-238 828.6 631 70.5
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 7.8e-238 827.4 625 72.0
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.0e-237 827.0 655 68.7
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.7e-237 826.2 651 69.3
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 4.3e-236 821.6 631 72.3
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.6e-235 818.5 634 70.2
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 4.7e-235 818.1 633 70.1
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 6.2e-235 817.8 659 69.0
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.8e-234 816.2 660 70.2
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.2e-233 813.5 667 68.8
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.0e-233 812.8 667 69.4
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 2.0e-233 812.8 635 71.2
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.3e-232 810.1 676 68.9
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.3e-232 810.1 667 69.1
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.7e-232 809.7 649 69.6
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 3.8e-232 808.5 657 69.7
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 4.9e-232 808.1 636 70.9
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 6.4e-232 807.7 668 69.6
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.2e-230 803.5 619 72.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 2.1e-230 802.7 655 67.9
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.7e-229 799.7 657 67.4
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.0e-229 798.9 642 69.3
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 5.1e-229 798.1 613 69.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 6.6e-229 797.7 661 68.1
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.9e-228 796.2 658 67.5
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.9e-228 796.2 646 68.1
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.9e-228 796.2 646 68.1
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.9e-228 796.2 646 68.1
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.9e-228 796.2 675 66.4
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.9e-228 796.2 628 72.8
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 4.3e-228 795.0 641 69.9
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.6e-227 793.1 667 66.7
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.6e-227 793.1 673 66.4
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 1.6e-227 793.1 642 69.0
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 8.1e-227 790.8 686 65.6
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 6.9e-226 787.7 673 66.3
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.2e-225 786.9 625 69.1
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.3e-224 783.5 637 67.8
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.3e-224 783.5 657 67.1
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.7e-224 783.1 672 65.5
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.9e-224 782.3 668 67.1
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.4e-223 780.0 659 66.9
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.4e-223 780.0 661 66.0
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.2e-223 778.5 527 77.0
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 9.3e-223 777.3 661 66.9
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.5e-222 775.4 661 66.6
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 3.5e-222 775.4 665 66.6
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 3.0e-221 772.3 672 66.7
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 8.7e-221 770.8 646 67.0
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 2.5e-220 769.2 661 66.3
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 2.5e-220 769.2 713 63.7
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 9.6e-220 767.3 637 67.0
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.1e-219 766.1 646 67.2
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 6.2e-219 764.6 671 63.5
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 3.8e-216 755.4 671 64.1
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.1e-215 753.8 660 64.5
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.9e-215 753.1 660 64.5
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.2e-215 752.3 660 64.2
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 5.5e-215 751.5 659 64.8
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.6e-214 750.0 659 64.6
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.5e-212 742.7 640 65.0
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.3e-211 740.3 660 63.6
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.7e-211 738.8 574 71.8
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.8e-208 728.8 664 61.7
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 2.3e-205 719.5 617 66.9
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.4e-202 709.5 686 61.2
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 9.0e-202 707.6 538 69.7
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 2.9e-200 702.6 642 62.6
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.9e-197 692.2 648 59.3
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 2.2e-195 686.4 647 60.6
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.4e-194 683.7 622 60.5
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.2e-193 680.6 562 66.0
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 7.2e-191 671.4 506 72.7
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 3.9e-189 665.6 556 67.4
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 3.1e-186 656.0 511 70.3
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 4.1e-186 655.6 665 56.7
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.7e-179 633.6 658 57.6
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 4.1e-178 629.0 521 67.2
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 9.1e-170 601.3 643 56.0
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 5.4e-162 575.5 636 55.2
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.6e-158 562.8 410 73.9
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 2.8e-150 536.6 462 67.3
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 3.4e-148 529.6 454 64.5
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.7e-147 527.3 529 55.8
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.9e-147 526.6 634 47.3
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.7e-147 526.2 455 67.3
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.0e-144 518.1 647 50.9
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 2.3e-141 506.9 473 58.1
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 5.2e-141 505.8 654 45.0
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 5.6e-127 459.1 412 62.9
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.5e-119 434.5 329 69.3
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 1.3e-118 431.4 672 43.3
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 8.1e-118 428.7 592 44.3
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-115 421.0 631 45.3
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.4e-109 400.6 337 68.5
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.3e-88 330.9 351 55.0
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 4.3e-87 326.6 320 62.2
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.2e-81 308.5 180 90.0
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.7e-80 302.8 210 81.4
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.2e-76 292.0 178 89.3
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 4.2e-74 283.5 178 87.1
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 7.2e-74 282.7 648 35.2
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.1e-73 281.2 213 70.9
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.1e-71 275.4 224 63.4
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 5.9e-68 263.1 232 64.2
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.6e-65 253.8 168 87.5
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 3.9e-64 250.4 210 65.7
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 7.4e-63 246.1 174 79.9
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 1.6e-60 238.4 739 31.3
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.5e-55 221.9 180 72.8
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.0e-55 221.5 169 69.8
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 1.6e-49 201.8 155 69.0
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 4.7e-49 200.3 155 69.0
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 3.0e-48 197.6 673 30.6
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 8.8e-48 196.1 149 76.5
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.8e-43 180.6 128 74.2
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 6.8e-40 169.9 127 73.2
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 1.6e-36 158.7 92 91.3
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.6e-35 152.9 138 65.9
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 6.8e-32 143.3 92 84.8
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 6.8e-32 143.3 92 84.8
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 6.8e-32 143.3 92 84.8
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.5e-28 131.0 99 67.7
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 6.0e-28 130.2 187 42.8
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.5e-26 124.8 112 60.7
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.3e-24 118.2 119 61.3
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.4e-22 110.2 94 60.6
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 7.1e-21 106.7 95 58.9
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.2e-20 105.9 58 96.6
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.7e-20 104.8 98 58.2
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.7e-19 102.1 95 58.9
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.5e-18 99.0 100 68.0
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-17 95.9 55 89.1
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 6.2e-17 93.6 90 60.0
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 1.2e-15 89.4 93 52.7
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 6.4e-14 83.6 75 61.3
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 2.4e-13 81.6 82 51.2
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 4.1e-13 80.9 85 50.6
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 4.6e-12 77.4 48 87.5
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 5.1e-11 73.9 642 21.7
Sopen01g018800 Solanum pennellii HOM05D003777 ORTHO05D393350 1.9e-10 72.0 142 40.1
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 1.4e-08 65.9 49 71.4
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.8e-08 65.5 154 37.7


User provided reference genes

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