Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045390.3 Solanum lycopersicum HOM05D004834 ORTHO05D006247 1.1e-29 132.5 60 100.0
Sopen11g020840 Solanum pennellii HOM05D004834 ORTHO05D006247 4.7e-25 117.1 54 100.0
PGSC0003DMG403008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 4.0e-24 114.0 54 96.3
Oeu035654.3 Olea europaea HOM05D004834 ORTHO05D006247 2.2e-22 108.2 54 88.9
DCAR_013465 Daucus carota HOM05D004834 ORTHO05D006247 2.9e-22 107.8 54 88.9
Nn2g14430 Nelumbo nucifera HOM05D004834 ORTHO05D006247 2.9e-22 107.8 54 88.9
Thecc.05G183400 Theobroma cacao HOM05D004834 ORTHO05D006247 2.9e-22 107.8 54 88.9
CANSAT64G0017 Cannabis sativa HOM05D004834 ORTHO05D006247 3.7e-22 107.5 54 90.7
CANSAT64G2176 Cannabis sativa HOM05D004834 ORTHO05D006247 3.7e-22 107.5 54 90.7
MELO3C009581.2 Cucumis melo HOM05D004834 ORTHO05D006247 3.7e-22 107.5 54 90.7
CsaV3_3G038380 Cucumis sativus L. HOM05D004834 ORTHO05D006247 3.7e-22 107.5 54 90.7
TAR636G2709 Trochodendron aralioides HOM05D004834 ORTHO05D006247 3.7e-22 107.5 54 90.7
Atru.chr8.1261 Acer truncatum HOM05D004834 ORTHO05D006247 4.9e-22 107.1 54 88.9
CiPaw.09G024600 Carya illinoinensis HOM05D004834 ORTHO05D006247 4.9e-22 107.1 54 88.9
Potri.016G064800 Populus trichocarpa HOM05D004834 ORTHO05D006247 4.9e-22 107.1 54 87.0
Cpa.g.sc222.7 Carica papaya HOM05D004834 ORTHO05D006247 6.4e-22 106.7 54 88.9
AUR62036303 Chenopodium quinoa HOM05D004834 ORTHO05D006247 6.4e-22 106.7 54 88.9
Aa31sc167G60 Aethionema arabicum HOM05D004834 ORTHO05D006247 8.3e-22 106.3 54 88.9
Duzib093G1706 Durio zibethinus HOM05D004834 ORTHO05D006247 8.3e-22 106.3 54 88.9
Gohir.A09G131900 Gossypium hirsutum HOM05D004834 ORTHO05D006247 8.3e-22 106.3 54 88.9
Gorai.006G146800 Gossypium raimondii HOM05D004834 ORTHO05D006247 8.3e-22 106.3 54 88.9
Manes.09G041400 Manihot esculenta HOM05D004834 ORTHO05D006247 8.3e-22 106.3 54 87.0
THA.LOC104799266 Tarenaya hassleriana HOM05D004834 ORTHO05D006247 8.3e-22 106.3 54 88.9
TAR633G1355 Trochodendron aralioides HOM05D004834 ORTHO05D006247 8.3e-22 106.3 54 88.9
Zm00001eb117230 Zea mays HOM05D004834 ORTHO05D006247 8.3e-22 106.3 54 88.9
Ah.02g115150 Amaranthus hybridus HOM05D004834 ORTHO05D006247 1.1e-21 105.9 54 87.0
CSS0029343 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 1.1e-21 105.9 54 87.0
Sp6g36280 Schrenkiella parvula HOM05D004834 ORTHO05D006247 1.1e-21 105.9 54 87.0
QL07p026067 Quercus lobata HOM05D004834 ORTHO05D006247 1.4e-21 105.5 53 86.8
TWI53G0913 Tripterygium wilfordii HOM05D004834 ORTHO05D006247 1.4e-21 105.5 54 87.0
Rhsim03G0058000 Rhododendron simsii HOM05D004834 ORTHO05D006247 1.9e-21 105.1 54 88.9
Rhsim03G0058100 Rhododendron simsii HOM05D004834 ORTHO05D006247 1.9e-21 105.1 54 88.9
Sed0002421 Sechium edule HOM05D004834 ORTHO05D006247 1.9e-21 105.1 54 88.9
CSS0012663 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 2.4e-21 104.8 54 87.0
CAN.G409.3 Capsicum annuum HOM05D004834 ORTHO05D006247 2.4e-21 104.8 54 88.9
AUR62038413 Chenopodium quinoa HOM05D004834 ORTHO05D006247 2.4e-21 104.8 54 85.2
Cc06_g07030 Coffea canephora HOM05D004834 ORTHO05D006247 2.4e-21 104.8 54 85.2
Migut.J00722 Erythranthe guttata HOM05D004834 ORTHO05D006247 3.2e-21 104.4 54 88.9
Thhalv10013121m.g Eutrema salsugineum HOM05D004834 ORTHO05D006247 3.2e-21 104.4 54 87.0
Phvul.001G199000 Phaseolus vulgaris HOM05D004834 ORTHO05D006247 4.1e-21 104.0 54 85.2
ECA238G0502 Erigeron canadensis HOM05D004834 ORTHO05D006247 5.4e-21 103.6 54 87.0
Lalb_Chr20g0111191 Lupinus albus HOM05D004834 ORTHO05D006247 5.4e-21 103.6 54 83.3
Psat3g026160 Pisum sativum HOM05D004834 ORTHO05D006247 5.4e-21 103.6 54 83.3
VMungo1383G2386 Vigna mungo HOM05D004834 ORTHO05D006247 5.4e-21 103.6 54 83.3
Eucgr.A02536 Eucalyptus grandis HOM05D004834 ORTHO05D006247 7.0e-21 103.2 54 83.3
Lsat_1_v5_gn_2_102000 Lactuca sativa HOM05D004834 ORTHO05D006247 7.0e-21 103.2 54 87.0
PSO384G0426 Papaver somniferum HOM05D004834 ORTHO05D006247 7.0e-21 103.2 54 83.3
SGA_v2.0_scaffold112G31558 Striga asiatica HOM05D004834 ORTHO05D006247 7.0e-21 103.2 54 85.2
GSVIVG01022507001 Vitis vinifera HOM05D004834 ORTHO05D006247 7.0e-21 103.2 54 85.2
AL6G16670 Arabidopsis lyrata HOM05D004834 ORTHO05D006247 9.2e-21 102.8 54 85.2
AT5G06580 Arabidopsis thaliana HOM05D004834 ORTHO05D006247 9.2e-21 102.8 54 85.2
TPR.G14418 Trifolium pratense HOM05D004834 ORTHO05D006247 9.2e-21 102.8 54 83.3
COL.COLO4_29472 Corchorus olitorius HOM05D004834 ORTHO05D006247 1.2e-20 102.4 54 83.3
Gohir.D09G128200 Gossypium hirsutum HOM05D004834 ORTHO05D006247 1.2e-20 102.4 54 85.2
RcHm_v2.0_Chr3g0477531 Rosa chinensis HOM05D004834 ORTHO05D006247 1.2e-20 102.4 54 85.2
Actinidia03850 Actinidia chinensis HOM05D004834 ORTHO05D006247 1.6e-20 102.1 54 85.2
Dinv25085 Davidia involucrata HOM05D004834 ORTHO05D006247 1.6e-20 102.1 54 85.2
Aqoxy1G00576 Aquilegia oxysepala HOM05D004834 ORTHO05D006247 2.0e-20 101.7 54 83.3
Carub.0006s0546 Capsella rubella HOM05D004834 ORTHO05D006247 2.0e-20 101.7 54 83.3
Hma1.2p1_0304F.1_g119280 Hydrangea macrophylla HOM05D004834 ORTHO05D006247 2.0e-20 101.7 54 85.2
arahy.Tifrunner.gnm1.ann1.5D1JVS Arachis hypogaea HOM05D004834 ORTHO05D006247 2.7e-20 101.3 54 81.5
arahy.Tifrunner.gnm1.ann1.5D1K5R Arachis hypogaea HOM05D004834 ORTHO05D006247 2.7e-20 101.3 54 81.5
MBI11_g39498_MAGBIO Magnolia biondii HOM05D004834 ORTHO05D006247 2.7e-20 101.3 54 83.3
Ciclev10011373m.g Citrus clementina HOM05D004834 ORTHO05D006247 4.6e-20 100.5 54 85.2
MD12G1046600 Malus domestica HOM05D004834 ORTHO05D006247 4.6e-20 100.5 54 83.3
unitig_26.g9147 Utricularia gibba HOM05D004834 ORTHO05D006247 4.6e-20 100.5 52 84.6
Medtr7g107050 Medicago truncatula HOM05D004834 ORTHO05D006247 6.0e-20 100.1 54 79.6
HanXRQChr14g0453201 Helianthus annuus HOM05D004834 ORTHO05D006247 7.8e-20 99.8 54 81.5
Lj1g0003379 Lotus japonicus HOM05D004834 ORTHO05D006247 7.8e-20 99.8 54 83.3
FAN05G2138 Fragaria x ananassa HOM05D004834 ORTHO05D006247 1.0e-19 99.4 54 83.3
FAN05G4019 Fragaria x ananassa HOM05D004834 ORTHO05D006247 1.0e-19 99.4 54 83.3
FAN14G4987 Fragaria x ananassa HOM05D004834 ORTHO05D006247 1.0e-19 99.4 54 83.3
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.7e-19 98.6 54 83.3
Ca_09087_v3 Cicer arietinum L. HOM05D004834 ORTHO05D006247 1.7e-19 98.6 54 81.5
MD12G1046700 Malus domestica HOM05D004834 ORTHO05D006247 1.7e-19 98.6 54 81.5
Prupe.7G088800 Prunus persica HOM05D004834 ORTHO05D006247 1.7e-19 98.6 54 81.5
Prupe.7G088900 Prunus persica HOM05D004834 ORTHO05D006247 1.7e-19 98.6 54 81.5
HPP92_012150 Vanilla planifolia HOM05D004834 ORTHO05D006247 1.7e-19 98.6 54 79.6
FAN02G4310 Fragaria x ananassa HOM05D004834 ORTHO05D006247 3.9e-19 97.4 54 81.5
SalBow1G1939 Salvia bowleyana HOM05D004834 ORTHO05D006247 3.9e-19 97.4 54 81.5
C09p70190 Brassica napus HOM05D004834 ORTHO05D006247 5.0e-19 97.1 54 79.6
BolC9t59763H Brassica oleracea HOM05D004834 ORTHO05D006247 5.0e-19 97.1 54 79.6
BraA10t45020Z Brassica rapa HOM05D004834 ORTHO05D006247 5.0e-19 97.1 54 79.6
A10p29810 Brassica napus HOM05D004834 ORTHO05D006247 8.6e-19 96.3 54 77.8
Cfa020095 Carpinus fangiana HOM05D004834 ORTHO05D006247 1.9e-18 95.1 50 86.0
Hund10783 Selenicereus undatus HOM05D004834 ORTHO05D006247 2.5e-18 94.7 50 86.0
Sabra16G0066600 Salix brachista HOM05D004834 ORTHO05D006247 5.6e-18 93.6 79 60.8
FvH4_6g21120 Fragaria vesca HOM05D004834 ORTHO05D006247 9.5e-18 92.8 51 82.4
PSO339G5030 Papaver somniferum HOM05D004834 ORTHO05D006247 1.2e-17 92.4 71 63.4
FAN09G1764 Fragaria x ananassa HOM05D004834 ORTHO05D006247 2.1e-17 91.7 50 84.0
vmacro07522 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 2.1e-17 91.7 50 82.0
Pp3c24_4090 Physcomitrium patens HOM05D004834 ORTHO05D006247 1.7e-14 82.0 54 68.5
MSTRG.19322 Avicennia marina HOM05D004834 ORTHO05D006247 2.2e-14 81.6 43 86.0
Mapoly0056s0055 Marchantia polymorpha HOM05D004834 ORTHO05D006247 8.3e-14 79.7 54 63.0
CBR_g59429 Chara braunii HOM05D001161 ORTHO05D000497 1.4e-13 79.0 52 63.5
AagrBONN_evm.TU.Sc2ySwM_228.4653 Anthoceros agrestis HOM05D004834 ORTHO05D006247 1.9e-13 78.6 54 64.8
vmacro07524 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 3.2e-13 77.8 42 83.3
ClCG10G017910 Citrullus lanatus HOM05D004834 ORTHO05D006247 4.1e-13 77.4 40 90.0
Haze_20096 Corylus avellana HOM05D004834 ORTHO05D006247 7.1e-13 76.6 40 87.5
Pp3c20_18170 Physcomitrium patens HOM05D004834 ORTHO05D006247 1.6e-12 75.5 54 63.0
Cre10.g434900 Chlamydomonas reinhardtii HOM05D004834 ORTHO05D006247 2.1e-09 65.1 49 59.2
Cfa024396 Carpinus fangiana HOM05D001072 ORTHO05D006247 1.1e-08 62.8 46 60.9
PRCOL_00003029 Prasinoderma coloniale HOM05D004834 ORTHO05D006247 4.0e-08 60.8 51 54.9
MCO11G780 Micromonas commoda HOM05D004834 ORTHO05D006247 3.7e-06 54.3 47 53.2


User provided reference genes

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