Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g030770.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 2.2e-38 161.8 80 100.0
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 6.5e-14 80.5 50 78.0
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 3.0e-11 71.6 44 79.5
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 4.0e-11 71.2 45 77.8
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 4.0e-11 71.2 45 77.8
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 6.7e-11 70.5 44 77.3
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 3.3e-10 68.2 44 72.7
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 4.4e-10 67.8 44 72.7
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 4.4e-10 67.8 44 72.7
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 5.7e-10 67.4 44 70.5
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 9.7e-10 66.6 44 70.5
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 9.7e-10 66.6 44 70.5
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 68.2
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 70.5
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 70.5
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 70.5
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 70.5
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 70.5
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 70.5
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 70.5
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 68.2
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 1.3e-09 66.2 44 70.5
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 2.2e-09 65.5 44 68.2
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 2.2e-09 65.5 44 68.2
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 2.2e-09 65.5 44 68.2
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 2.2e-09 65.5 44 68.2
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 2.8e-09 65.1 44 65.9
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.7e-09 64.7 50 64.0
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 3.7e-09 64.7 50 64.0
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 3.7e-09 64.7 41 73.2
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 4.8e-09 64.3 44 65.9
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 4.8e-09 64.3 44 65.9
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 4.8e-09 64.3 44 65.9
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 4.8e-09 64.3 44 65.9
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 6.3e-09 63.9 44 63.6
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 6.3e-09 63.9 44 65.9
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 8.2e-09 63.5 41 70.7
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 8.2e-09 63.5 41 70.7
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 8.2e-09 63.5 44 68.2
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 8.2e-09 63.5 44 68.2
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 8.2e-09 63.5 44 65.9
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 8.2e-09 63.5 41 70.7
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 8.2e-09 63.5 41 70.7
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 8.2e-09 63.5 44 65.9
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 8.2e-09 63.5 39 74.4
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 1.1e-08 63.2 44 65.9
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 1.1e-08 63.2 47 66.0
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 1.1e-08 63.2 44 65.9
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.4e-08 62.8 44 63.6
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 1.4e-08 62.8 44 63.6
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 1.8e-08 62.4 44 61.4
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 1.8e-08 62.4 44 65.9
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 2.4e-08 62.0 50 58.0
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 2.4e-08 62.0 44 63.6
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 2.4e-08 62.0 44 63.6
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 2.4e-08 62.0 41 68.3
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 2.4e-08 62.0 44 61.4
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 2.4e-08 62.0 44 63.6
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 65.9
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 65.9
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 65.9
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 65.9
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 65.9
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 65.9
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 65.9
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 63.6
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 3.1e-08 61.6 50 60.0
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 3.1e-08 61.6 44 63.6
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 4.1e-08 61.2 44 65.9
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 5.3e-08 60.8 39 71.8
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 5.3e-08 60.8 44 65.9
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 5.3e-08 60.8 44 63.6
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 9.1e-08 60.1 44 65.9
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 9.1e-08 60.1 44 63.6
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 9.1e-08 60.1 40 67.5
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 9.1e-08 60.1 44 65.9
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 1.2e-07 59.7 44 65.9
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.2e-07 59.7 44 63.6
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 1.2e-07 59.7 44 61.4
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 2.0e-07 58.9 39 64.1
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 2.0e-07 58.9 41 65.9
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 2.0e-07 58.9 44 59.1
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 2.0e-07 58.9 44 59.1
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 2.0e-07 58.9 44 59.1
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 2.7e-07 58.5 44 63.6
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 2.7e-07 58.5 44 63.6
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 2.7e-07 58.5 44 63.6
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 2.7e-07 58.5 44 61.4
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 2.7e-07 58.5 44 61.4
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 2.7e-07 58.5 44 63.6
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 3.5e-07 58.2 44 61.4
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 3.5e-07 58.2 39 69.2
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 5.9e-07 57.4 43 67.4
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 5.9e-07 57.4 44 61.4
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 7.7e-07 57.0 37 75.7
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 7.7e-07 57.0 44 61.4
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.7e-07 57.0 44 61.4
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.7e-07 57.0 44 61.4
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 7.7e-07 57.0 41 61.0
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 7.7e-07 57.0 44 61.4
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 1.0e-06 56.6 35 77.1
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 1.3e-06 56.2 39 64.1
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 1.3e-06 56.2 39 64.1
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 1.7e-06 55.8 49 57.1
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 1.7e-06 55.8 37 70.3
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 1.7e-06 55.8 43 58.1
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 2.2e-06 55.5 39 64.1
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 3.8e-06 54.7 41 61.0
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 3.8e-06 54.7 39 66.7


User provided reference genes

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