Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.3e-34 149.1 71 100.0
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.3e-17 90.1 53 79.2
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 1.2e-16 89.4 43 95.3
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.8e-15 85.5 43 90.7
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-14 82.8 40 90.0
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-14 82.8 40 90.0
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 6.4e-13 77.0 40 85.0
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 8.3e-13 76.6 40 85.0
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 1.1e-12 76.3 52 69.2
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 2.4e-12 75.1 40 82.5
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.4e-12 75.1 43 76.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.4e-12 75.1 43 76.7
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 5.4e-12 73.9 43 72.1
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 7.1e-12 73.6 43 74.4
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 9.2e-12 73.2 43 76.7
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 1.6e-11 72.4 43 76.7
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.6e-11 72.4 43 74.4
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 2.7e-11 71.6 43 74.4
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.7e-11 71.6 43 72.1
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.7e-11 71.6 43 72.1
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 2.7e-11 71.6 43 74.4
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 3.5e-11 71.2 43 72.1
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 4.6e-11 70.9 43 72.1
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 6.0e-11 70.5 43 74.4
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 6.0e-11 70.5 43 74.4
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 6.0e-11 70.5 43 72.1
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 6.0e-11 70.5 43 69.8
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 6.0e-11 70.5 44 68.2
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 7.8e-11 70.1 43 72.1
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.3e-10 69.3 40 75.0
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.7e-10 68.9 69 46.4
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.7e-10 68.9 43 69.8
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 1.7e-10 68.9 43 72.1
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 2.3e-10 68.6 43 69.8
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 2.3e-10 68.6 68 50.0
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 3.9e-10 67.8 44 65.9
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 5.1e-10 67.4 43 67.4
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 5.1e-10 67.4 43 69.8
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 5.1e-10 67.4 43 69.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 6.6e-10 67.0 43 72.1
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 6.6e-10 67.0 43 67.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 8.6e-10 66.6 43 69.8
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.1e-09 66.2 43 67.4
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.5e-09 65.9 51 62.7
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 1.5e-09 65.9 43 72.1
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 1.9e-09 65.5 43 69.8
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 2.5e-09 65.1 43 69.8
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.3e-09 64.7 40 67.5
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 4.3e-09 64.3 43 67.4
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 4.3e-09 64.3 43 65.1
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 4.3e-09 64.3 43 65.1
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.6e-09 63.9 43 67.4
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.6e-09 63.9 43 67.4
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 5.6e-09 63.9 43 65.1
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 5.6e-09 63.9 43 69.8
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 5.6e-09 63.9 43 69.8
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 7.3e-09 63.5 43 65.1
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.5e-09 63.2 43 69.8
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 9.5e-09 63.2 40 67.5
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.2e-08 62.8 57 54.4
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.2e-08 62.8 43 65.1
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.6e-08 62.4 65 44.6
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.6e-08 62.4 57 54.4
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 2.1e-08 62.0 43 65.1
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 2.1e-08 62.0 43 67.4
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.1e-08 62.0 43 67.4
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 2.1e-08 62.0 43 65.1
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-08 61.6 43 67.4
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-08 61.6 40 70.0
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-08 61.6 43 67.4
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 2.8e-08 61.6 43 62.8
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 2.8e-08 61.6 43 65.1
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 3.6e-08 61.2 43 65.1
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 3.6e-08 61.2 43 65.1
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 3.6e-08 61.2 43 65.1
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 4.7e-08 60.8 43 65.1
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 4.7e-08 60.8 43 65.1
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.7e-08 60.8 42 64.3
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 1.1e-07 59.7 43 60.5
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 1.1e-07 59.7 43 62.8
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.1e-07 59.7 43 62.8
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 1.8e-07 58.9 43 62.8
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.8e-07 58.9 58 51.7
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 2.4e-07 58.5 43 58.1
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 2.4e-07 58.5 43 62.8
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 4.0e-07 57.8 42 61.9
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 6.8e-07 57.0 51 52.9
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 8.9e-07 56.6 42 61.9
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 8.9e-07 56.6 42 61.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 8.9e-07 56.6 42 61.9
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.2e-06 56.2 42 59.5
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 1.2e-06 56.2 42 59.5
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 1.2e-06 56.2 67 44.8
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.5e-06 55.8 42 61.9
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 2.0e-06 55.5 42 57.1
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 5.8e-06 53.9 42 57.1
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 9.9e-06 53.1 40 60.0
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 9.9e-06 53.1 43 48.8


User provided reference genes

Program Settings