Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 4.9e-149 531.2 281 100.0
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 1.7e-141 506.1 271 97.8
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 3.0e-130 468.8 271 91.1
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 4.0e-127 458.4 279 86.0
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 4.9e-125 451.4 271 85.6
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 1.8e-71 273.5 278 56.8
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.0e-69 267.7 270 59.6
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 1.0e-69 267.7 278 57.9
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 5.5e-68 261.9 270 57.4
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.4e-63 247.3 270 55.6
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 7.0e-63 245.0 290 52.4
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 4.5e-62 242.3 309 49.8
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 5.9e-62 241.9 278 54.0
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.7e-61 240.4 270 54.1
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 2.3e-61 240.0 275 54.5
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 3.8e-61 239.2 269 55.8
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 3.8e-61 239.2 277 54.9
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.9e-60 236.9 269 54.3
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.9e-60 236.9 269 54.3
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 3.3e-60 236.1 280 52.9
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 5.6e-60 235.3 278 54.0
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 7.3e-60 235.0 280 53.9
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 9.5e-60 234.6 278 52.9
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 2.1e-59 233.4 306 50.7
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 2.8e-59 233.0 280 52.1
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 4.7e-59 232.3 278 53.2
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 8.0e-59 231.5 278 52.9
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.4e-58 230.7 278 52.5
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 2.3e-58 229.9 285 51.6
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.0e-58 229.6 346 46.2
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 4.0e-58 229.2 278 51.8
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 6.8e-58 228.4 270 54.1
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 8.9e-58 228.0 286 51.7
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 1.5e-57 227.3 286 51.7
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 2.6e-57 226.5 277 51.6
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 5.7e-57 225.3 270 53.7
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 5.7e-57 225.3 325 48.3
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 7.5e-57 224.9 278 52.2
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 7.5e-57 224.9 280 52.5
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.7e-56 223.8 278 50.0
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 2.2e-56 223.4 279 52.3
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 2.2e-56 223.4 257 54.1
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 4.9e-56 222.2 291 49.1
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 6.4e-56 221.9 281 50.5
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 8.3e-56 221.5 291 49.5
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 1.1e-55 221.1 278 51.1
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.8e-55 220.3 272 50.7
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 9.2e-55 218.0 282 52.1
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.2e-54 217.6 256 53.9
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 3.9e-53 212.6 278 49.3
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 5.0e-53 212.2 281 49.8
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.6e-53 211.8 285 50.2
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.1e-52 211.1 293 48.5
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.9e-52 210.3 257 51.4
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 2.5e-52 209.9 281 49.5
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 2.5e-52 209.9 280 49.3
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 3.3e-52 209.5 324 44.8
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 5.6e-52 208.8 255 52.2
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 7.3e-52 208.4 272 51.5
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.7e-51 205.7 268 50.0
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 8.0e-51 204.9 277 49.8
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.8e-50 203.8 277 49.8
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 2.3e-50 203.4 253 51.4
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.1e-50 203.0 275 50.5
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 6.8e-50 201.8 279 48.7
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 2.6e-49 199.9 306 44.1
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 2.6e-49 199.9 282 48.6
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.8e-49 198.0 260 50.4
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 1.7e-48 197.2 229 54.1
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 1.1e-47 194.5 250 50.8
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.9e-47 193.7 266 49.2
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 5.4e-47 192.2 247 50.6
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.6e-43 180.6 317 41.0
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 5.8e-41 172.2 267 46.1
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 9.9e-41 171.4 277 45.1
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 1.4e-39 167.5 309 39.8
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.2e-39 166.4 228 49.6
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 4.1e-39 166.0 319 39.2
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 7.1e-39 165.2 304 38.8
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 6.0e-38 162.2 341 39.6
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 7.8e-38 161.8 249 45.0
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 3.9e-37 159.5 297 41.8
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 6.6e-37 158.7 208 48.6
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.9e-36 157.1 270 43.7
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.9e-36 157.1 270 43.7
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.5e-36 156.8 259 41.3
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.6e-36 155.6 239 46.4
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.2e-35 154.5 261 42.1
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.6e-35 154.1 269 41.3
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 2.8e-35 153.3 278 41.7
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 3.6e-35 152.9 261 42.9
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 3.6e-35 152.9 261 42.9
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 8.1e-35 151.8 280 41.8
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 1.8e-34 150.6 261 42.1
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 2.4e-34 150.2 261 40.6
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 2.0e-33 147.1 285 40.4
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 7.6e-33 145.2 132 62.1
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 2.2e-32 143.7 282 41.1
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 4.9e-32 142.5 230 41.3
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 2.4e-31 140.2 324 38.0
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 3.2e-31 139.8 320 38.1
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 4.1e-31 139.4 320 38.1
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 2.1e-30 137.1 262 38.5
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 7.8e-30 135.2 325 35.7
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.3e-29 134.4 210 46.2
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.3e-29 133.7 129 57.4
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.9e-28 130.6 279 36.2
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 2.1e-27 127.1 239 41.0
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.7e-27 125.9 128 58.6
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 9.9e-25 118.2 108 64.8
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.1e-18 98.2 83 63.9
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 3.1e-18 96.7 110 51.8
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.0e-18 96.3 105 60.0
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.0e-17 94.0 61 73.8
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 4.9e-16 89.4 62 69.4
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 6.4e-16 89.0 59 71.2
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 2.4e-15 87.0 117 43.6
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.1e-14 84.0 130 41.5
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 8.7e-13 78.6 219 31.5
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 6.2e-11 72.4 233 31.3
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 6.2e-11 72.4 92 44.6
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 6.9e-10 68.9 51 74.5
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.5e-09 66.2 101 42.6
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.5e-09 66.2 101 42.6
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 8.4e-08 62.0 47 76.6
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 8.4e-08 62.0 47 76.6
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 1.2e-06 58.2 203 31.5
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 1.6e-06 57.8 72 50.0


User provided reference genes

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