Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 1.1e-223 779.6 381 100.0
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 8.0e-219 763.5 376 99.2
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 2.2e-216 755.4 381 96.9
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 3.7e-176 621.7 382 80.6
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 3.6e-155 552.0 391 67.0
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.2e-152 542.7 386 67.6
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 2.9e-152 542.3 382 66.8
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.1e-151 540.4 392 66.8
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.6e-150 535.0 390 66.7
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 1.0e-149 533.9 391 65.7
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 6.6e-149 531.2 406 63.5
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 2.5e-148 529.3 379 66.0
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 1.6e-147 526.6 391 66.0
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 4.8e-147 525.0 391 64.7
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.8e-146 523.1 372 67.2
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 2.4e-146 522.7 380 65.8
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 5.3e-146 521.5 399 62.9
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 9.0e-146 520.8 392 66.1
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 4.5e-145 518.5 373 64.3
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 4.5e-145 518.5 379 65.4
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 7.6e-145 517.7 382 63.1
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 1.4e-143 513.5 373 65.4
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 1.9e-143 513.1 373 65.7
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 2.4e-143 512.7 391 63.4
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 4.2e-143 511.9 386 64.0
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 5.4e-143 511.5 385 63.9
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 9.3e-143 510.8 386 64.8
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 3.5e-142 508.8 373 65.4
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.0e-141 507.3 386 64.5
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 1.8e-141 506.5 388 64.4
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.8e-141 506.5 386 63.2
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 1.8e-141 506.5 388 63.4
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.3e-141 506.1 404 60.1
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 3.0e-141 505.8 381 63.3
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 3.9e-141 505.4 383 62.9
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 3.9e-141 505.4 392 64.0
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.1e-140 503.8 386 63.7
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.5e-140 503.4 377 66.3
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 1.9e-140 503.1 380 62.6
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 3.3e-140 502.3 407 60.2
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 9.6e-140 500.7 384 61.5
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 1.3e-139 500.4 389 63.5
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 6.2e-139 498.0 389 62.5
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.1e-138 497.3 384 63.8
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 1.8e-138 496.5 385 63.1
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.4e-138 496.1 393 63.1
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 9.0e-138 494.2 384 63.3
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 1.2e-137 493.8 455 56.5
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 2.6e-137 492.7 385 62.3
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 2.6e-137 492.7 385 62.6
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.7e-136 490.0 380 61.8
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 2.2e-136 489.6 413 59.3
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 8.4e-136 487.6 393 60.1
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.1e-135 487.3 384 60.2
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.9e-135 486.5 382 59.4
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 2.5e-135 486.1 384 61.7
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 3.2e-135 485.7 387 60.5
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 4.2e-135 485.3 387 60.7
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 4.2e-135 485.3 358 65.9
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 4.2e-135 485.3 383 59.5
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 5.5e-135 485.0 381 59.8
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 9.3e-135 484.2 471 53.3
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.1e-134 483.0 427 58.3
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 3.5e-134 482.3 413 58.1
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.0e-133 480.7 422 58.8
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 1.3e-133 480.3 390 60.0
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 1.3e-133 480.3 390 60.0
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 1.9e-132 476.5 386 60.1
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 3.3e-132 475.7 382 59.4
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 9.0e-130 467.6 360 62.2
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 2.9e-128 462.6 369 60.7
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 4.2e-127 458.8 499 49.1
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 7.1e-127 458.0 359 64.1
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 9.3e-127 457.6 400 57.0
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 1.2e-126 457.2 376 59.0
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 6.7e-125 451.4 376 59.3
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 7.4e-124 448.0 377 57.0
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 9.0e-122 441.0 373 55.2
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 4.5e-121 438.7 387 56.6
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 4.5e-121 438.7 387 57.6
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 1.0e-120 437.6 380 54.5
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 2.5e-119 433.0 390 55.9
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 2.8e-115 419.5 373 58.2
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 7.7e-113 411.4 295 66.4
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 7.2e-111 404.8 370 55.4
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.2e-110 404.1 232 84.5
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 4.4e-108 395.6 500 44.6
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 9.1e-98 361.3 321 54.2
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 5.2e-93 345.5 270 62.2
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 6.8e-93 345.1 416 47.1
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 2.6e-92 343.2 379 47.5
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 4.4e-92 342.4 374 46.0
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 1.2e-89 334.3 218 71.6
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 7.0e-82 308.5 373 44.2
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.3e-80 304.3 216 67.6
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.9e-79 300.4 295 52.5
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 8.0e-78 295.0 353 45.3
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 3.0e-77 293.1 170 77.1
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 4.0e-69 266.2 168 69.6
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 8.9e-69 265.0 409 42.8
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 2.0e-65 253.8 153 75.2
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.3e-64 251.1 229 55.5
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 4.7e-62 242.7 139 76.3
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.0e-60 237.3 121 93.4
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 6.0e-57 225.7 243 51.0
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 1.6e-54 217.6 561 29.1
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 5.8e-52 209.1 377 38.2
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 2.4e-50 203.8 373 37.3
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 7.1e-50 202.2 167 57.5
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 2.3e-48 197.2 250 43.2
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.5e-47 193.7 113 75.2
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.6e-47 192.6 139 64.7
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 1.8e-45 187.6 272 39.0
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 2.9e-43 180.3 126 64.3
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.0e-40 171.8 251 39.8
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 4.3e-39 166.4 438 30.4
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 3.6e-38 163.3 99 71.7
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 2.4e-37 160.6 180 49.4
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 4.8e-30 136.3 79 73.4
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.4e-26 124.8 128 48.4
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.4e-26 124.0 363 30.0
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 2.4e-26 124.0 417 29.0
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 4.6e-25 119.8 446 25.8
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 3.4e-20 103.6 220 35.0
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 3.4e-20 103.6 220 35.0
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 7.6e-20 102.4 58 72.4
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 7.9e-17 92.4 182 37.4
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.8e-16 91.3 109 40.4
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.3e-16 90.9 69 56.5
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 1.5e-15 88.2 54 72.2
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 3.2e-10 70.5 51 62.7
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 7.9e-09 65.9 371 23.7
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 2.3e-08 64.3 50 60.0
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 6.7e-08 62.8 354 21.8
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 3.3e-07 60.5 368 23.6
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 5.7e-07 59.7 28 78.6
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.6e-06 58.2 365 24.1
FAN04G0823 Fragaria x ananassa HOM05D000997 ORTHO05D000828 1.6e-06 58.2 196 25.0
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 1.6e-06 58.2 373 19.8
FAN13G1962 Fragaria x ananassa HOM05D000997 ORTHO05D000828 2.2e-06 57.8 196 24.0
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.2e-06 57.8 32 81.2
FAN27G1527 Fragaria x ananassa HOM05D002332 ORTHO05D002509 3.7e-06 57.0 203 26.1
RcHm_v2.0_Chr7g0239801 Rosa chinensis HOM05D000997 ORTHO05D000828 3.7e-06 57.0 196 24.5
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 3.7e-06 57.0 73 42.5
FAN24G2812 Fragaria x ananassa HOM05D002332 ORTHO05D002509 4.8e-06 56.6 203 25.6
ATR0564G336 Amborella trichopoda HOM05D000997 ORTHO05D000828 6.3e-06 56.2 154 26.0
BcaC07g41105 Brassica carinata HOM05D004736 ORTHO05D006424 6.3e-06 56.2 164 30.5
FvH4_5g37830 Fragaria vesca HOM05D000997 ORTHO05D000828 6.3e-06 56.2 196 25.0
FAN15G0333 Fragaria x ananassa HOM05D002332 ORTHO05D002509 6.3e-06 56.2 203 26.1
FAN18G0422 Fragaria x ananassa HOM05D000997 ORTHO05D000828 6.3e-06 56.2 196 25.0
TAR625G0288 Trochodendron aralioides HOM05D000997 ORTHO05D000828 6.3e-06 56.2 195 25.1
C08p41070 Brassica napus HOM05D004736 ORTHO05D006424 8.2e-06 55.8 164 31.1
BolC8t51671H Brassica oleracea HOM05D004736 ORTHO05D006424 8.2e-06 55.8 164 31.1


User provided reference genes

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