Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 4.1e-170 601.3 298 100.0
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 5.0e-168 594.3 298 99.0
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 4.2e-167 591.3 298 98.0
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 9.8e-164 580.1 298 96.0
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 9.1e-162 573.5 298 95.6
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 1.4e-157 559.7 298 92.3
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.2e-153 546.6 333 84.4
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 5.2e-141 504.6 298 82.2
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 8.9e-141 503.8 298 83.2
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 8.9e-141 503.8 291 84.5
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 9.8e-140 500.4 292 84.2
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.3e-139 500.0 298 82.2
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 7.0e-138 494.2 292 80.8
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.2e-137 493.4 292 82.2
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 3.5e-137 491.9 298 80.9
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 4.6e-137 491.5 292 80.8
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 6.0e-137 491.1 302 81.5
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 6.0e-137 491.1 292 83.2
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 7.8e-137 490.7 298 81.2
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.3e-136 490.0 299 80.6
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.7e-136 489.6 292 80.5
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.7e-136 489.6 298 80.9
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 8.6e-136 487.3 331 74.3
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.9e-135 486.1 298 80.2
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 9.5e-135 483.8 299 80.6
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.2e-134 483.4 298 78.9
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.1e-134 482.6 298 79.9
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 2.8e-134 482.3 298 78.5
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 6.2e-134 481.1 309 78.3
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 6.2e-134 481.1 292 78.1
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 8.1e-134 480.7 298 76.8
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 8.1e-134 480.7 298 78.9
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.1e-133 480.3 300 78.7
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 1.8e-133 479.6 298 77.2
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 2.3e-133 479.2 298 78.5
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 3.1e-133 478.8 292 80.1
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 3.1e-133 478.8 299 79.9
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 5.2e-133 478.0 298 77.5
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 5.2e-133 478.0 297 78.8
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.5e-132 476.5 294 78.6
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 2.6e-132 475.7 299 78.3
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 2.6e-132 475.7 295 79.3
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 3.4e-132 475.3 299 77.6
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 2.2e-131 472.6 298 77.2
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 2.9e-131 472.2 298 75.8
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 3.7e-131 471.9 299 77.6
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 3.7e-131 471.9 293 79.9
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 4.9e-131 471.5 299 77.6
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 4.9e-131 471.5 298 77.2
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 1.9e-130 469.5 292 78.8
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 2.4e-130 469.2 290 79.0
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 4.1e-130 468.4 298 78.5
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 4.1e-130 468.4 298 77.9
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 7.1e-130 467.6 299 75.6
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 1.6e-129 466.5 295 77.3
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.6e-129 466.5 297 76.1
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 2.1e-129 466.1 298 76.2
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 3.5e-129 465.3 298 77.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 4.6e-129 464.9 295 76.6
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.3e-128 463.4 292 76.7
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 1.3e-128 463.4 298 75.5
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.3e-128 463.4 300 76.0
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 6.6e-128 461.1 299 74.6
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.1e-127 460.3 329 70.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.1e-126 456.1 282 77.7
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 3.6e-126 455.3 291 74.2
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 3.6e-126 455.3 291 74.6
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 8.1e-126 454.1 282 80.9
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 1.1e-125 453.8 298 72.8
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 1.8e-125 453.0 291 73.5
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 3.1e-125 452.2 298 75.8
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 72.2
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 73.5
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 73.5
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 73.5
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 73.2
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 4.4e-124 448.4 291 72.9
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 7.6e-124 447.6 298 75.2
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 3.7e-123 445.3 298 71.5
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 6.4e-123 444.5 298 72.1
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 6.0e-121 438.0 311 70.7
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 6.0e-121 438.0 298 73.5
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 5.6e-119 431.4 272 78.7
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 1.2e-118 430.3 239 87.0
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.2e-118 430.3 295 69.8
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.1e-118 429.5 298 73.5
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 4.7e-118 428.3 268 80.2
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 4.7e-118 428.3 294 73.1
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.7e-115 419.9 270 77.0
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 4.2e-114 415.2 247 81.0
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 9.3e-114 414.1 267 74.9
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 5.1e-112 408.3 237 83.1
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 9.6e-111 404.1 291 67.7
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 6.9e-109 397.9 231 83.1
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.4e-106 389.4 247 78.1
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.1e-103 380.6 222 81.5
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 5.5e-98 361.7 238 74.4
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 1.0e-91 340.9 252 65.1
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 6.5e-91 338.2 287 58.9
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.1e-90 337.4 282 66.0
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 6.0e-89 331.6 291 56.4
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 1.1e-82 310.8 208 70.7
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.4e-82 310.5 411 46.2
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 5.5e-66 255.4 231 56.7
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 2.0e-60 236.9 153 77.1
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 5.2e-56 222.2 258 53.1
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 3.3e-55 219.5 248 46.0
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 7.5e-55 218.4 292 39.4
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 3.5e-52 209.5 119 84.9
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 9.4e-50 201.4 117 76.1
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 3.7e-46 189.5 190 54.2
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 3.1e-45 186.4 218 50.0
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 4.9e-38 162.5 234 41.5
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.8e-37 160.6 175 52.6
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 5.7e-31 139.0 111 62.2
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 6.6e-27 125.6 82 76.8
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.1e-26 124.8 73 80.8
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 2.3e-19 100.5 52 90.4
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.1e-18 98.2 54 83.3
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.1e-16 91.7 60 73.3
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.4e-15 86.7 47 83.0
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 5.8e-15 85.9 52 75.0
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 1.3e-14 84.7 190 35.3
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 1.7e-14 84.3 59 67.8
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 3.2e-13 80.1 133 37.6
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 9.2e-13 78.6 46 80.4
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 2.8e-09 67.0 59 57.6
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.1e-08 65.1 166 33.1
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 5.2e-08 62.8 164 29.9
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.2e-07 61.6 81 46.9
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 2.6e-07 60.5 181 29.8
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 3.4e-07 60.1 166 30.1
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 1.3e-06 58.2 42 64.3
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 1.7e-06 57.8 82 45.1
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.9e-06 57.0 52 55.8
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 8.4e-06 55.5 26 88.5


User provided reference genes

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