Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 5.8e-49 197.2 98 100.0
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 7.2e-15 84.0 40 95.0
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 7.2e-15 84.0 67 67.2
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 3.6e-14 81.6 38 100.0
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 3.6e-14 81.6 38 100.0
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 3.6e-14 81.6 38 100.0
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 4.7e-14 81.3 41 87.8
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 4.7e-14 81.3 41 87.8
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 92.5
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 8.0e-14 80.5 40 90.0
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 8.0e-14 80.5 40 90.0
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 8.0e-14 80.5 40 90.0
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 8.0e-14 80.5 40 90.0
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 1.0e-13 80.1 40 90.0
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 1.0e-13 80.1 56 71.4
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 1.0e-13 80.1 56 71.4
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 1.0e-13 80.1 56 71.4
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 1.0e-13 80.1 56 71.4
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 1.0e-13 80.1 56 71.4
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 1.8e-13 79.3 38 97.4
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 1.8e-13 79.3 38 97.4
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 1.8e-13 79.3 40 95.0
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 1.8e-13 79.3 38 97.4
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 2.3e-13 79.0 38 94.7
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 2.3e-13 79.0 40 90.0
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 3.0e-13 78.6 38 97.4
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 4.0e-13 78.2 38 94.7
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 4.0e-13 78.2 40 85.0
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 4.0e-13 78.2 38 94.7
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 4.0e-13 78.2 38 94.7
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 5.2e-13 77.8 38 92.1
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 5.2e-13 77.8 38 94.7
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 8.8e-13 77.0 38 92.1
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 1.2e-12 76.6 38 89.5
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.2e-12 76.6 38 92.1
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 1.2e-12 76.6 38 92.1
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-12 76.3 38 92.1
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-12 76.3 38 92.1
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-12 76.3 38 92.1
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-12 76.3 38 92.1
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-12 76.3 38 92.1
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.5e-12 76.3 38 92.1
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 1.5e-12 76.3 38 94.7
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 2.0e-12 75.9 38 92.1
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 2.0e-12 75.9 38 92.1
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 2.0e-12 75.9 38 92.1
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 2.0e-12 75.9 38 92.1
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 2.6e-12 75.5 38 89.5
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.6e-12 75.5 62 61.3
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 4.4e-12 74.7 38 89.5
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 5.7e-12 74.3 38 92.1
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 7.5e-12 73.9 38 92.1
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.5e-12 73.9 38 89.5
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.5e-12 73.9 38 89.5
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.5e-12 73.9 38 89.5
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.5e-12 73.9 38 89.5
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.5e-12 73.9 39 87.2
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 7.5e-12 73.9 38 92.1
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 7.5e-12 73.9 37 91.9
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 9.8e-12 73.6 38 89.5
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-11 73.2 40 82.5
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 1.3e-11 73.2 38 89.5
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 1.7e-11 72.8 51 72.5
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 1.7e-11 72.8 40 82.5
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.2e-11 72.4 38 84.2
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.2e-11 72.4 40 82.5
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.2e-11 72.4 40 82.5
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.8e-11 72.0 38 84.2
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 2.8e-11 72.0 38 86.8
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 3.7e-11 71.6 40 82.5
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 3.7e-11 71.6 38 86.8
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 3.7e-11 71.6 39 84.6
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 4.8e-11 71.2 41 82.9
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 6.3e-11 70.9 37 89.2
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 6.3e-11 70.9 38 86.8
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 6.3e-11 70.9 35 97.1
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 8.3e-11 70.5 38 86.8
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.3e-11 70.5 37 86.5
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.3e-11 70.5 38 86.8
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 8.3e-11 70.5 38 84.2
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 8.3e-11 70.5 38 84.2
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 8.3e-11 70.5 38 84.2
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 1.1e-10 70.1 36 91.7
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 1.1e-10 70.1 38 86.8
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.8e-10 69.3 38 89.5
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 2.4e-10 68.9 38 78.9
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.1e-10 68.6 37 86.5
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 4.1e-10 68.2 38 84.2
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 4.1e-10 68.2 38 84.2
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.1e-10 68.2 38 81.6
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 5.4e-10 67.8 38 84.2
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 5.4e-10 67.8 38 84.2
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 7.0e-10 67.4 39 84.6
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.2e-09 66.6 33 90.9
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 1.6e-09 66.2 38 81.6
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-09 66.2 38 84.2
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-09 66.2 38 84.2
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 2.7e-09 65.5 40 75.0
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.7e-09 65.5 38 78.9
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.5e-09 64.7 36 83.3
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 5.9e-09 64.3 38 81.6
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 5.9e-09 64.3 37 81.1
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 5.9e-09 64.3 43 72.1
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 7.7e-09 63.9 40 80.0
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.0e-08 63.5 38 76.3
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 1.0e-08 63.5 39 76.9
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 1.0e-08 63.5 39 79.5
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 1.7e-08 62.8 39 79.5
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 3.8e-08 61.6 38 71.1
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 8.5e-08 60.5 31 87.1
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 1.5e-07 59.7 39 76.9
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 1.9e-07 59.3 39 74.4
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.2e-07 58.5 33 81.8
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 3.2e-07 58.5 38 78.9
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 5.5e-07 57.8 36 77.8
CsaV3_5G028980 Cucumis sativus L. HOM05D000890 ORTHO05D000697 2.7e-06 55.5 32 78.1


User provided reference genes

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