Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g074610.3 Solanum lycopersicum HOM05D002908 ORTHO05D005461 4.1e-69 264.6 135 100.0
Sopen10g027090 Solanum pennellii HOM05D001620 ORTHO05D005461 5.4e-61 237.7 123 97.6
Nitab4.5_0008172g0010 Nicotiana tabacum HOM05D001620 ORTHO05D005461 6.2e-41 171.0 123 75.6
Nitab4.5_0001700g0020 Nicotiana tabacum HOM05D001620 ORTHO05D005461 1.1e-40 170.2 123 75.6
CAN.G234.1 Capsicum annuum HOM05D001620 ORTHO05D005461 4.4e-39 164.9 124 75.0
Peaxi162Scf00374g00732 Petunia axillaris HOM05D001620 ORTHO05D005461 2.1e-28 129.4 124 63.7
Dinv14184 Davidia involucrata HOM05D001620 ORTHO05D005461 3.1e-24 115.5 77 79.2
Hma1.2p1_0619F.1_g190430 Hydrangea macrophylla HOM05D001620 ORTHO05D005461 2.0e-23 112.8 82 75.6
SalBow1G8418 Salvia bowleyana HOM05D001620 ORTHO05D005461 5.8e-23 111.3 77 79.2
Migut.B00943 Erythranthe guttata HOM05D001620 ORTHO05D005461 7.6e-23 110.9 77 80.5
Oeu048110.1 Olea europaea HOM05D001620 ORTHO05D005461 1.1e-21 107.1 81 74.1
TAR376G0870 Trochodendron aralioides HOM05D001620 ORTHO05D005461 1.1e-21 107.1 77 76.6
MSTRG.16958 Avicennia marina HOM05D001620 ORTHO05D005461 2.4e-21 105.9 78 76.9
Gohir.D02G193200 Gossypium hirsutum HOM05D001620 ORTHO05D005461 2.4e-21 105.9 105 62.9
Gorai.005G216000 Gossypium raimondii HOM05D001620 ORTHO05D005461 2.4e-21 105.9 105 62.9
FvH4_2g17040 Fragaria vesca HOM05D001620 ORTHO05D005461 3.2e-21 105.5 80 75.0
FAN24G0497 Fragaria x ananassa HOM05D001620 ORTHO05D005461 3.2e-21 105.5 80 75.0
FAN15G2752 Fragaria x ananassa HOM05D001620 ORTHO05D005461 4.2e-21 105.1 80 75.0
FAN27G0152 Fragaria x ananassa HOM05D001620 ORTHO05D005461 4.2e-21 105.1 80 75.0
Gohir.A03G170100 Gossypium hirsutum HOM05D001620 ORTHO05D005461 4.2e-21 105.1 105 62.9
Aqoxy6G02985 Aquilegia oxysepala HOM05D001620 ORTHO05D005461 7.1e-21 104.4 113 57.5
GSVIVG01023856001 Vitis vinifera HOM05D001620 ORTHO05D005461 7.1e-21 104.4 75 76.0
RcHm_v2.0_Chr6g0281221 Rosa chinensis HOM05D001620 ORTHO05D005461 9.3e-21 104.0 79 72.2
SGA_v2.0_scaffold104G30256 Striga asiatica HOM05D001620 ORTHO05D005461 9.3e-21 104.0 77 77.9
DCAR_029911 Daucus carota HOM05D001620 ORTHO05D005461 1.2e-20 103.6 78 71.8
CANSAT25G0192 Cannabis sativa HOM05D001620 ORTHO05D005461 6.0e-20 101.3 79 70.9
COL.COLO4_03849 Corchorus olitorius HOM05D001620 ORTHO05D005461 6.0e-20 101.3 81 71.6
Haze_01957 Corylus avellana HOM05D001620 ORTHO05D005461 1.0e-19 100.5 77 72.7
Actinidia17986 Actinidia chinensis HOM05D001620 ORTHO05D005461 2.3e-19 99.4 77 71.4
Cfa005393 Carpinus fangiana HOM05D001620 ORTHO05D005461 2.3e-19 99.4 77 71.4
Thecc.02G148000 Theobroma cacao HOM05D001620 ORTHO05D005461 3.0e-19 99.0 81 71.6
THA.LOC104800065 Tarenaya hassleriana HOM05D001620 ORTHO05D005461 6.7e-19 97.8 80 66.2
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 8.7e-19 97.4 82 65.9
MD10G1143100 Malus domestica HOM05D001620 ORTHO05D005461 8.7e-19 97.4 77 71.4
Prupe.8G182100 Prunus persica HOM05D001620 ORTHO05D005461 1.1e-18 97.1 82 65.9
Rhsim07G0221500 Rhododendron simsii HOM05D001620 ORTHO05D005461 1.1e-18 97.1 84 66.7
MELO3C015694.2 Cucumis melo HOM05D001620 ORTHO05D005461 1.5e-18 96.7 81 66.7
CsaV3_7G002140 Cucumis sativus L. HOM05D001620 ORTHO05D005461 1.5e-18 96.7 81 66.7
CSS0013600 Camellia sinensis var. sinensis HOM05D001620 ORTHO05D005461 1.9e-18 96.3 125 52.8
Potri.009G169600 Populus trichocarpa HOM05D001620 ORTHO05D005461 1.9e-18 96.3 79 70.9
Sabra09G0131500 Salix brachista HOM05D001620 ORTHO05D005461 1.9e-18 96.3 79 70.9
Ciclev10029031m.g Citrus clementina HOM05D001620 ORTHO05D005461 2.5e-18 95.9 79 70.9
ATR0605G201 Amborella trichopoda HOM05D001620 ORTHO05D005461 7.4e-18 94.4 75 73.3
HanXRQChr03g0093541 Helianthus annuus HOM05D001620 ORTHO05D005461 7.4e-18 94.4 79 64.6
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 9.6e-18 94.0 83 63.9
CiPaw.05G094900 Carya illinoinensis HOM05D001620 ORTHO05D005461 9.6e-18 94.0 77 67.5
QL11p056803 Quercus lobata HOM05D001620 ORTHO05D005461 9.6e-18 94.0 72 72.2
Cc00_g29970 Coffea canephora HOM05D001620 ORTHO05D005461 1.3e-17 93.6 75 72.0
Sed0027002 Sechium edule HOM05D001620 ORTHO05D005461 1.3e-17 93.6 78 64.1
ClCG02G003250 Citrullus lanatus HOM05D001620 ORTHO05D005461 1.6e-17 93.2 81 65.4
BcaB08g37218 Brassica carinata HOM05D001620 ORTHO05D005461 2.1e-17 92.8 87 60.9
AL6G19720 Arabidopsis lyrata HOM05D001620 ORTHO05D005461 4.8e-17 91.7 84 64.3
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 4.8e-17 91.7 88 60.2
Lsat_1_v5_gn_4_71240 Lactuca sativa HOM05D001620 ORTHO05D005461 4.8e-17 91.7 81 64.2
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 6.2e-17 91.3 84 63.1
CARHR204080 Cardamine hirsuta HOM05D001620 ORTHO05D005461 6.2e-17 91.3 84 64.3
Nn6g31636 Nelumbo nucifera HOM05D001620 ORTHO05D005461 6.2e-17 91.3 86 62.8
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 8.1e-17 90.9 85 62.4
Eucgr.H05004 Eucalyptus grandis HOM05D001620 ORTHO05D005461 1.4e-16 90.1 79 65.8
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 3.1e-16 89.0 89 59.6
MBI01_g28400_MAGBIO Magnolia biondii HOM05D001620 ORTHO05D005461 3.1e-16 89.0 104 55.8
PSO675G1501 Papaver somniferum HOM05D001620 ORTHO05D005461 1.5e-15 86.7 77 66.2
PGR042G3114 Punica granatum HOM05D000256 ORTHO05D005461 2.0e-15 86.3 79 60.8
Sc18g0005700 Simmondsia chinensis HOM05D001620 ORTHO05D005461 2.0e-15 86.3 88 56.8
AT5G09315 Arabidopsis thaliana HOM05D001620 ORTHO05D005461 2.6e-15 85.9 90 58.9
PSO541G2761 Papaver somniferum HOM05D001620 ORTHO05D005461 2.6e-15 85.9 77 66.2
CDE08G0732 Ceratophyllum demersum HOM05D001619 ORTHO05D001541 7.6e-15 84.3 80 63.8
Manes.15G113700 Manihot esculenta HOM05D001620 ORTHO05D005461 9.9e-15 84.0 105 48.6
HPP92_015473 Vanilla planifolia HOM05D002051 ORTHO05D002041 1.3e-14 83.6 84 54.8
Atru.chr5.3578 Acer truncatum HOM05D001620 ORTHO05D005461 1.7e-14 83.2 79 63.3
Sp6g34000 Schrenkiella parvula HOM05D001620 ORTHO05D005461 3.2e-13 79.0 88 53.4
TWI79G0573 Tripterygium wilfordii HOM05D001620 ORTHO05D005461 9.3e-13 77.4 80 60.0
Zm00001eb079800 Zea mays HOM05D001620 ORTHO05D005461 1.2e-12 77.0 89 53.9
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 2.7e-12 75.9 110 48.2
Aqoxy366s001 Aquilegia oxysepala HOM05D002908 ORTHO05D009379 2.7e-12 75.9 96 52.1
Aqoxy7G01536 Aquilegia oxysepala HOM05D002908 ORTHO05D009379 2.7e-12 75.9 82 56.1
Os04g0475500 Oryza sativa ssp. japonica HOM05D001620 ORTHO05D005461 4.6e-12 75.1 77 58.4
TAR626G0970 Trochodendron aralioides HOM05D002908 ORTHO05D009379 4.6e-12 75.1 79 58.2
TAR624G0662 Trochodendron aralioides HOM05D002908 ORTHO05D009379 3.9e-11 72.0 69 58.0
MELO3C024259.2 Cucumis melo HOM05D002908 ORTHO05D009379 6.7e-11 71.2 71 54.9
CsaV3_7G033470 Cucumis sativus L. HOM05D002908 ORTHO05D009379 6.7e-11 71.2 71 54.9
Sed0010660 Sechium edule HOM05D002908 ORTHO05D009379 8.7e-11 70.9 71 54.9
Sc12g0009520 Simmondsia chinensis HOM05D002908 ORTHO05D009379 8.7e-11 70.9 100 46.0
ClCG09G001870 Citrullus lanatus HOM05D002908 ORTHO05D009379 1.5e-10 70.1 71 53.5
Prupe.3G064300 Prunus persica HOM05D002908 ORTHO05D009379 1.9e-10 69.7 83 54.2
PSO210G1505 Papaver somniferum HOM05D002908 ORTHO05D009379 7.4e-10 67.8 69 55.1
Solyc03g120510.1 Solanum lycopersicum HOM05D002908 ORTHO05D009379 7.4e-10 67.8 69 59.4
CDE05G0493 Ceratophyllum demersum HOM05D002908 ORTHO05D009379 9.6e-10 67.4 69 55.1
PGSC0003DMG400002549 Solanum tuberosum HOM05D002908 ORTHO05D009379 9.6e-10 67.4 69 59.4
HPP92_003237 Vanilla planifolia HOM05D001620 ORTHO05D009379 9.6e-10 67.4 72 54.2
GSVIVG01017048001 Vitis vinifera HOM05D002908 ORTHO05D009379 9.6e-10 67.4 79 50.6
AUR62016512 Chenopodium quinoa HOM05D002908 ORTHO05D009379 1.3e-09 67.0 72 58.3
CSS0003033 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D009379 1.6e-09 66.6 79 51.9
Cfa020089 Carpinus fangiana HOM05D002908 ORTHO05D009379 1.6e-09 66.6 67 53.7
COL.COLO4_30460 Corchorus olitorius HOM05D002908 ORTHO05D009379 2.1e-09 66.2 83 50.6
Haze_20099 Corylus avellana HOM05D002908 ORTHO05D009379 2.1e-09 66.2 68 54.4
Glyma.08G203300 Glycine max HOM05D002908 ORTHO05D009379 2.1e-09 66.2 84 47.6
MD17G1189400 Malus domestica HOM05D002908 ORTHO05D009379 2.1e-09 66.2 79 54.4
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 3.7e-09 65.5 80 53.8
CANSAT56G0911 Cannabis sativa HOM05D002908 ORTHO05D009379 3.7e-09 65.5 72 54.2
CiPaw.01G234500 Carya illinoinensis HOM05D002908 ORTHO05D009379 3.7e-09 65.5 67 52.2
Duzib192G0150 Durio zibethinus HOM05D002908 ORTHO05D009379 3.7e-09 65.5 82 53.7
Psat4g199360 Pisum sativum HOM05D002908 ORTHO05D009379 3.7e-09 65.5 84 51.2
AUR62011686 Chenopodium quinoa HOM05D002908 ORTHO05D009379 4.8e-09 65.1 72 56.9
Nn3g18126 Nelumbo nucifera HOM05D002908 ORTHO05D009379 4.8e-09 65.1 79 53.2
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 4.8e-09 65.1 76 51.3
EL10Ac5g10639 Beta vulgaris HOM05D002908 ORTHO05D009379 6.2e-09 64.7 73 53.4
PGR102G2077 Punica granatum HOM05D002908 ORTHO05D009379 6.2e-09 64.7 70 57.1
TAR365G0548 Trochodendron aralioides HOM05D001620 ORTHO05D005461 6.2e-09 64.7 81 50.6
vmacro16974 Vaccinium macrocarpon HOM05D002908 ORTHO05D009379 6.2e-09 64.7 69 58.0
C04p45170 Brassica napus HOM05D002908 ORTHO05D009379 8.2e-09 64.3 102 42.2
BolC4t26097H Brassica oleracea HOM05D002908 ORTHO05D009379 8.2e-09 64.3 102 42.2
CAN.G438.37 Capsicum annuum HOM05D002908 ORTHO05D009379 1.1e-08 63.9 86 50.0
CARHR063820 Cardamine hirsuta HOM05D002908 ORTHO05D009379 1.1e-08 63.9 72 55.6
Gohir.A10G067500 Gossypium hirsutum HOM05D002908 ORTHO05D009379 1.1e-08 63.9 72 54.2
Gorai.011G073200 Gossypium raimondii HOM05D002908 ORTHO05D009379 1.1e-08 63.9 72 54.2
Lalb_Chr25g0280051 Lupinus albus HOM05D002908 ORTHO05D009379 1.1e-08 63.9 87 46.0
Gohir.D10G069366 Gossypium hirsutum HOM05D002908 ORTHO05D009379 1.4e-08 63.5 72 54.2
Hma1.2p1_0280F.1_g112770 Hydrangea macrophylla HOM05D002908 ORTHO05D009379 1.8e-08 63.2 69 59.4
SEGI_37669 Sequoiadendron giganteum HOM05D001620 ORTHO05D005461 1.8e-08 63.2 71 49.3
RcHm_v2.0_Chr2g0139281 Rosa chinensis HOM05D002908 ORTHO05D009379 2.4e-08 62.8 81 50.6
Oeu015935.2 Olea europaea HOM05D001620 ORTHO05D005461 3.1e-08 62.4 89 49.4
Oeu023760.1 Olea europaea HOM05D002908 ORTHO05D009379 3.1e-08 62.4 89 50.6
Thecc.06G094800 Theobroma cacao HOM05D002908 ORTHO05D009379 3.1e-08 62.4 82 50.0
Nitab4.5_0001315g0040 Nicotiana tabacum HOM05D002908 ORTHO05D009379 4.0e-08 62.0 84 50.0
Nitab4.5_0012010g0010 Nicotiana tabacum HOM05D002908 ORTHO05D009379 4.0e-08 62.0 84 50.0
Eucgr.J02952 Eucalyptus grandis HOM05D002908 ORTHO05D009379 5.3e-08 61.6 75 53.3
Thhalv10019037m.g Eutrema salsugineum HOM05D002908 ORTHO05D009379 9.0e-08 60.8 83 49.4
Lsat_1_v5_gn_1_35381 Lactuca sativa HOM05D002908 ORTHO05D009379 9.0e-08 60.8 84 47.6
AL5G17200 Arabidopsis lyrata HOM05D002908 ORTHO05D009379 1.2e-07 60.5 83 49.4
BcaC02g09652 Brassica carinata HOM05D002908 ORTHO05D009379 1.2e-07 60.5 102 40.2
Manes.04G131200 Manihot esculenta HOM05D002908 ORTHO05D009379 1.5e-07 60.1 87 46.0
QL05p021357 Quercus lobata HOM05D002908 ORTHO05D009379 1.5e-07 60.1 67 55.2
SEGI_06390 Sequoiadendron giganteum HOM05D001620 ORTHO05D005461 1.5e-07 60.1 82 47.6
AT3G27750 Arabidopsis thaliana HOM05D002908 ORTHO05D009379 2.0e-07 59.7 83 50.6
VMungo0331G1893 Vigna mungo HOM05D002908 ORTHO05D009379 2.0e-07 59.7 84 45.2
Carub.0002s2770 Capsella rubella HOM05D002908 ORTHO05D009379 2.6e-07 59.3 89 46.1
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 2.6e-07 59.3 79 50.6
Nn7g37619 Nelumbo nucifera HOM05D001620 ORTHO05D005461 2.6e-07 59.3 77 51.9
Dinv44168 Davidia involucrata HOM05D001620 ORTHO05D005461 3.4e-07 58.9 95 40.0
Lalb_Chr01g0013071 Lupinus albus HOM05D002908 ORTHO05D009379 3.4e-07 58.9 72 50.0
Sp5g35960 Schrenkiella parvula HOM05D002908 ORTHO05D009379 3.4e-07 58.9 83 48.2
TPR.G14812 Trifolium pratense HOM05D002908 ORTHO05D009379 3.4e-07 58.9 84 46.4
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 3.4e-07 58.9 80 46.2
BcaB06g27228 Brassica carinata HOM05D002908 ORTHO05D009379 5.8e-07 58.2 83 47.0
Cpa.g.sc109.48 Carica papaya HOM05D002908 ORTHO05D009379 5.8e-07 58.2 72 51.4
Ciclev10026419m.g Citrus clementina HOM05D002908 ORTHO05D009379 5.8e-07 58.2 107 39.3
Migut.D01010 Erythranthe guttata HOM05D002908 ORTHO05D009379 5.8e-07 58.2 79 48.1
Hma1.2p1_2359F.1_g320596 Hydrangea macrophylla HOM05D001620 ORTHO05D005461 5.8e-07 58.2 79 48.1
MSTRG.22018 Avicennia marina HOM05D001620 ORTHO05D005461 7.6e-07 57.8 79 50.6
MSTRG.4743 Avicennia marina HOM05D002908 ORTHO05D009379 7.6e-07 57.8 72 45.8
Lj3g0019237 Lotus japonicus HOM05D002908 ORTHO05D009379 7.6e-07 57.8 89 46.1
SalBow7G3178 Salvia bowleyana HOM05D002908 ORTHO05D009379 7.6e-07 57.8 69 50.7
Aa31LG4G30 Aethionema arabicum HOM05D002908 ORTHO05D009379 1.0e-06 57.4 83 45.8
A04p11470 Brassica napus HOM05D002908 ORTHO05D009379 1.0e-06 57.4 83 47.0
BraA04t16812Z Brassica rapa HOM05D002908 ORTHO05D009379 1.0e-06 57.4 83 47.0
HanXRQChr04g0096241 Helianthus annuus HOM05D002908 ORTHO05D009379 1.0e-06 57.4 79 48.1
MD04G1047000 Malus domestica HOM05D001620 ORTHO05D005461 1.0e-06 57.4 93 45.2
ATR0743G190 Amborella trichopoda HOM05D001620 ORTHO05D005461 1.7e-06 56.6 79 49.4
Cc04_g02900 Coffea canephora HOM05D002908 ORTHO05D009379 1.7e-06 56.6 108 41.7
Prupe.1G201600 Prunus persica HOM05D001620 ORTHO05D005461 2.2e-06 56.2 72 50.0
ATR0759G099 Amborella trichopoda HOM05D002908 ORTHO05D009379 2.9e-06 55.8 100 39.0
TWI12G0304 Tripterygium wilfordii HOM05D002908 ORTHO05D009379 2.9e-06 55.8 74 50.0
HPP92_013691 Vanilla planifolia HOM05D001620 ORTHO05D005461 2.9e-06 55.8 104 40.4
CANSAT54G0752 Cannabis sativa HOM05D001620 ORTHO05D005461 3.8e-06 55.5 85 43.5
Cpa.g.sc9.334 Carica papaya HOM05D001620 ORTHO05D005461 6.5e-06 54.7 72 48.6
Migut.N03083 Erythranthe guttata HOM05D001620 ORTHO05D005461 6.5e-06 54.7 79 46.8
Potri.003G051400 Populus trichocarpa HOM05D002908 ORTHO05D009379 6.5e-06 54.7 75 45.3
Sabra07G0109000 Salix brachista HOM05D001620 ORTHO05D005461 6.5e-06 54.7 99 37.4
Hund03188 Selenicereus undatus HOM05D001620 ORTHO05D005461 6.5e-06 54.7 68 51.5
FAN09G2948 Fragaria x ananassa HOM05D002908 ORTHO05D009379 8.4e-06 54.3 95 42.1


User provided reference genes

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