Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.1e-99 366.7 197 100.0
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 9.8e-88 327.0 191 92.7
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.2e-77 293.5 178 89.3
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.7e-77 292.4 178 89.3
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 4.6e-77 291.6 178 89.3
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.9e-71 271.6 178 85.4
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-69 266.9 178 83.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.3e-68 263.5 176 81.2
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 2.5e-59 232.6 176 69.3
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 9.0e-57 224.2 178 65.7
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.2e-56 223.8 161 70.8
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 1.2e-56 223.8 177 66.1
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.0e-56 223.0 187 64.7
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.6e-56 222.6 179 68.2
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 4.5e-56 221.9 179 68.7
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.3e-55 220.3 179 67.6
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.3e-55 220.3 205 59.5
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 2.2e-55 219.5 179 64.8
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 2.9e-55 219.2 182 64.3
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.8e-55 218.8 177 67.8
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 3.8e-55 218.8 172 65.7
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.8e-55 218.8 180 64.4
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.8e-55 218.8 180 64.4
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 4.9e-55 218.4 180 66.7
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.4e-55 218.0 177 67.8
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.4e-54 216.1 180 63.9
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.2e-54 215.7 180 63.9
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 5.4e-54 214.9 179 65.4
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 7.1e-54 214.5 176 65.3
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 9.3e-54 214.2 180 62.8
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 9.3e-54 214.2 182 63.2
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.1e-53 213.0 180 63.3
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.7e-53 212.6 180 64.4
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 1.3e-52 210.3 158 70.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.3e-52 209.5 177 68.4
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 3.0e-52 209.1 179 64.8
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 3.9e-52 208.8 177 62.1
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.9e-52 208.8 179 64.8
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 5.1e-52 208.4 179 62.6
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 6.7e-52 208.0 179 63.1
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 2.5e-51 206.1 179 63.7
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 2.5e-51 206.1 179 64.2
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.5e-51 206.1 179 59.8
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.3e-51 205.3 177 63.3
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 4.3e-51 205.3 177 61.6
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.4e-51 204.5 179 60.9
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 9.6e-51 204.1 178 65.2
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 9.6e-51 204.1 179 60.9
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.3e-50 203.8 167 64.1
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 1.6e-50 203.4 178 64.6
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.8e-50 202.6 179 59.2
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 2.8e-50 202.6 176 63.6
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 8.1e-50 201.1 177 61.0
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.1e-49 200.7 177 61.0
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.4e-49 199.5 177 61.6
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.4e-49 199.5 177 62.1
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.1e-49 199.1 176 62.5
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 4.0e-49 198.7 177 62.1
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 6.9e-49 198.0 179 58.7
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.0e-49 197.6 187 57.8
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.2e-48 197.2 176 63.1
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.5e-48 196.8 177 60.5
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 2.6e-48 196.1 192 57.3
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.2e-47 193.0 158 63.3
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 4.9e-47 191.8 177 58.8
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 6.5e-47 191.4 178 58.4
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 6.5e-47 191.4 179 59.8
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 8.4e-47 191.0 178 57.3
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 8.4e-47 191.0 178 57.3
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 8.4e-47 191.0 178 57.3
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.1e-46 190.7 178 57.9
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.1e-46 190.7 179 58.7
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.5e-46 189.5 178 61.2
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.2e-45 187.2 178 56.7
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.2e-45 187.2 176 59.7
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.6e-45 186.8 177 57.1
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 3.5e-45 185.7 176 56.8
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 3.5e-45 185.7 177 58.8
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 6.0e-45 184.9 180 52.8
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 7.9e-45 184.5 176 57.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.0e-44 184.1 179 55.9
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.3e-44 183.7 186 53.2
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 2.3e-44 183.0 182 54.4
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.9e-44 182.2 176 58.5
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 5.1e-44 181.8 177 58.8
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 5.1e-44 181.8 178 57.3
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 6.7e-44 181.4 176 56.8
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 2.5e-43 179.5 172 56.4
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 4.3e-43 178.7 176 57.4
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 5.7e-43 178.3 176 54.0
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 9.6e-43 177.6 177 55.9
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 9.6e-43 177.6 179 53.6
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 1.6e-42 176.8 176 57.4
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 2.1e-42 176.4 158 59.5
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 6.2e-42 174.9 217 51.2
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 5.3e-41 171.8 181 52.5
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 5.3e-41 171.8 176 57.4
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 6.9e-41 171.4 176 53.4
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 6.9e-41 171.4 176 56.8
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.5e-40 170.2 176 52.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.5e-40 170.2 176 52.8
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.5e-40 170.2 178 51.1
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 2.0e-40 169.9 167 55.1
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 2.6e-40 169.5 167 55.1
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.7e-39 166.8 182 49.5
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 8.4e-39 164.5 176 51.7
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-38 164.1 158 53.8
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.5e-38 162.9 138 60.1
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 7.1e-38 161.4 213 48.8
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 9.3e-38 161.0 176 52.8
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.2e-37 160.6 176 53.4
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 4.6e-37 158.7 176 52.8
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.0e-36 157.5 193 52.3
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.1e-35 154.1 180 50.0
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.6e-34 150.2 179 52.0
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.4e-33 147.1 137 57.7
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-30 137.5 178 51.1
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.2e-29 134.0 116 70.7
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 3.7e-26 122.5 171 39.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-24 117.1 149 50.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.3e-23 114.0 110 57.3
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 3.8e-23 112.5 176 38.6
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 8.5e-23 111.3 123 55.3
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.5e-22 109.8 186 40.9
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.0e-19 100.1 99 54.5
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.0e-19 100.1 95 54.7
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 9.7e-19 97.8 80 63.8
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 2.8e-18 96.3 162 41.4
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 2.8e-18 96.3 59 84.7
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.8e-18 96.3 95 54.7
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.4e-17 93.2 76 63.2
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 3.1e-17 92.8 80 61.2
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 2.6e-16 89.7 170 31.2
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.6e-16 89.7 72 72.2
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 4.5e-16 89.0 162 38.9
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-15 86.7 59 78.0
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-15 86.7 59 78.0
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-15 86.7 59 78.0
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 7.2e-14 81.6 88 51.1
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 9.4e-14 81.3 176 31.2
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 2.1e-13 80.1 59 69.5
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 4.7e-13 79.0 122 39.3
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 6.1e-13 78.6 59 72.9
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.0e-13 78.2 59 67.8
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.0e-12 77.8 59 72.9
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.3e-12 76.6 59 69.5
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 3.0e-12 76.3 48 85.4
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 7.4e-11 71.6 85 43.5
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 2.4e-09 66.6 49 69.4
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 1.3e-07 60.8 49 67.3
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 1.5e-06 57.4 201 27.4


User provided reference genes

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