Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 0.0e+00 1328.2 951 100.0
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 0.0e+00 1314.3 951 99.3
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 0.0e+00 1280.0 951 97.1
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 0.0e+00 1151.0 953 89.2
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 0.0e+00 1127.9 952 87.7
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 0.0e+00 1094.0 948 87.1
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 7.6e-303 1043.9 952 84.8
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 3.9e-299 1031.6 961 84.1
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.2e-297 1024.2 956 83.8
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 6.9e-288 994.2 955 79.8
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.2e-284 983.4 970 75.5
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 6.7e-283 977.6 954 79.8
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 2.7e-276 955.7 994 63.0
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 3.0e-275 952.2 955 67.2
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 1.0e-270 937.2 934 77.6
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.2e-269 931.8 933 77.8
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.0e-266 922.9 933 77.2
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 1.3e-265 920.2 933 77.2
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.4e-264 916.8 955 76.0
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 1.8e-264 916.4 955 76.2
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 4.1e-264 915.2 933 77.0
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 2.0e-263 912.9 953 76.6
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 2.6e-263 912.5 928 76.6
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 1.7e-262 909.8 958 75.9
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 3.8e-262 908.7 934 75.9
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 5.0e-262 908.3 936 75.3
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 8.5e-262 907.5 931 75.7
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 1.5e-261 906.7 933 75.9
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 1.5e-261 906.7 956 76.0
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.2e-260 903.7 953 75.3
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.6e-260 903.3 936 73.5
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 2.1e-260 902.9 953 75.9
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 2.7e-260 902.5 1019 69.4
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 4.7e-260 901.7 953 74.0
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 1.4e-259 900.2 931 74.4
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 6.7e-259 897.9 933 76.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 8.8e-259 897.5 938 73.6
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 7.5e-258 894.4 940 75.7
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 3.7e-257 892.1 956 75.6
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 2.4e-256 889.4 940 75.0
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 4.1e-256 888.6 956 73.7
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 3.5e-255 885.6 954 73.7
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.7e-254 883.2 977 61.8
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 6.5e-254 881.3 932 64.3
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 1.1e-253 880.6 929 74.5
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 2.7e-252 875.9 931 73.6
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 1.0e-251 874.0 940 74.9
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 2.6e-250 869.4 934 73.7
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 7.5e-250 867.8 961 73.9
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 9.8e-250 867.5 943 73.9
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 2.2e-249 866.3 930 66.7
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 4.8e-249 865.1 931 72.2
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 1.4e-248 863.6 938 74.3
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 1.4e-248 863.6 1127 65.7
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 1.8e-248 863.2 946 73.7
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.2e-247 860.5 932 73.1
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 1.2e-247 860.5 932 73.1
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 3.5e-247 859.0 930 67.7
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 3.5e-247 859.0 940 73.5
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 4.5e-247 858.6 983 71.2
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 9.5e-245 850.9 940 72.9
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.6e-244 850.1 940 72.7
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 2.8e-244 849.4 738 77.8
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-242 843.6 959 70.9
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 2.0e-242 843.2 934 70.6
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 2.6e-242 842.8 932 71.9
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 5.7e-242 841.6 959 70.9
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 2.2e-241 839.7 934 72.3
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.8e-241 839.3 959 70.7
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 1.1e-240 837.4 960 69.7
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.4e-240 835.1 959 70.5
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 9.2e-240 834.3 965 67.0
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 7.8e-239 831.2 951 72.6
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.9e-238 829.3 959 70.3
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 9.5e-237 824.3 953 62.3
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 2.8e-236 822.8 933 72.2
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 4.4e-234 815.5 940 71.4
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 5.7e-234 815.1 958 70.9
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 2.9e-233 812.8 933 70.7
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 3.7e-233 812.4 936 69.3
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 2.4e-232 809.7 955 70.5
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 4.6e-231 805.4 933 70.4
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 5.9e-231 805.1 948 68.7
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.3e-230 803.9 935 69.3
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.7e-230 803.5 967 68.3
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.5e-229 800.4 964 66.3
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 1.9e-229 800.0 956 70.8
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 3.3e-229 799.3 941 71.4
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 2.8e-228 796.2 956 70.6
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 1.1e-227 794.3 956 70.5
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 5.2e-227 792.0 956 70.4
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 9.8e-226 787.7 956 70.2
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 2.0e-223 780.0 958 49.2
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 1.3e-222 777.3 813 78.8
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 6.6e-222 775.0 886 71.3
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 2.8e-220 769.6 922 69.3
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 5.6e-213 745.3 936 68.6
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 1.5e-205 720.7 939 64.2
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 2.0e-202 710.3 929 64.2
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 3.2e-200 703.0 841 71.6
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 3.8e-193 679.5 938 63.9
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 1.0e-182 644.8 917 61.7
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 6.9e-179 632.1 859 65.4
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 7.1e-176 622.1 939 54.4
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.5e-165 587.8 714 61.9
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 1.3e-164 584.7 930 57.6
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 3.4e-162 576.6 931 57.9
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 8.5e-161 572.0 944 56.5
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 8.5e-161 572.0 944 56.5
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 7.2e-160 568.9 965 58.7
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 9.7e-157 558.5 924 57.0
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 6.6e-121 439.5 642 43.9
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 2.3e-105 387.9 936 48.8
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.9e-104 384.8 598 56.9
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 2.3e-102 377.9 589 41.6
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 1.5e-101 375.2 952 42.2
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 1.5e-93 348.6 290 63.8
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 2.1e-74 285.0 724 44.2
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 9.1e-46 189.9 185 56.8
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.9e-43 182.2 128 66.4
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 7.2e-43 180.3 135 62.2
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.6e-42 177.9 186 57.0
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.6e-40 171.8 125 62.4
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 2.0e-29 135.6 125 54.4
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 8.5e-28 130.2 117 59.0
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 9.4e-27 126.7 137 48.2
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 6.8e-25 120.6 85 72.9
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.6e-24 118.6 111 54.1
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 8.3e-23 113.6 76 78.9
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.8e-20 104.8 90 70.0
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 6.5e-20 104.0 78 70.5
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.9e-19 102.4 76 61.8
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.1e-18 99.0 91 57.1
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.4e-17 96.3 114 59.6
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 1.8e-17 95.9 83 61.4
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 8.8e-17 93.6 199 37.7
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.4e-14 85.5 75 57.3
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.9e-11 75.9 53 67.9
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 6.1e-10 70.9 55 65.5
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 1.5e-08 66.2 177 30.5
Lj1A939T58 Lonicera japonica HOM05D000526 ORTHO05D002053 2.8e-07 62.0 130 31.5
Nitab4.5_0002842g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 4.9e-07 61.2 172 27.3
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 4.9e-07 61.2 81 43.2
Peaxi162Scf00498g00525 Petunia axillaris HOM05D005151 ORTHO05D006322 6.3e-07 60.8 183 27.9
TAR623G0465 Trochodendron aralioides HOM05D000526 ORTHO05D002053 6.3e-07 60.8 130 32.3
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 8.3e-07 60.5 184 27.7
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 8.3e-07 60.5 184 28.3
TAR369G0222 Trochodendron aralioides HOM05D000526 ORTHO05D002053 8.3e-07 60.5 130 32.3
Nitab4.5_0002079g0070 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.1e-06 60.1 172 26.7
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 1.8e-06 59.3 186 26.3
ECA240G1097 Erigeron canadensis HOM05D005151 ORTHO05D006322 1.8e-06 59.3 177 28.2
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 1.8e-06 59.3 177 27.1
Oeu016530.1 Olea europaea HOM05D000526 ORTHO05D002053 1.8e-06 59.3 130 29.2
THA.LOC104809907 Tarenaya hassleriana HOM05D000526 ORTHO05D002053 1.8e-06 59.3 130 30.0
MSTRG.8258 Avicennia marina HOM05D000526 ORTHO05D002053 2.4e-06 58.9 130 31.5
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 2.4e-06 58.9 172 27.3
Phvul.002G153000 Phaseolus vulgaris HOM05D000526 ORTHO05D002053 2.4e-06 58.9 148 29.7
Solyc07g041080.3 Solanum lycopersicum HOM05D005151 ORTHO05D006322 2.4e-06 58.9 172 26.2
Sopen07g020370 Solanum pennellii HOM05D005151 ORTHO05D006322 2.4e-06 58.9 172 26.7
MBI15_g27849_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 3.2e-06 58.5 177 28.2
Lalb_Chr16g0379921 Lupinus albus HOM05D000526 ORTHO05D002053 4.1e-06 58.2 134 32.1
Carub.0004s1480 Capsella rubella HOM05D005151 ORTHO05D006322 5.4e-06 57.8 172 26.7
DCAR_011716 Daucus carota HOM05D000526 ORTHO05D002053 5.4e-06 57.8 130 30.8
Migut.F01455 Erythranthe guttata HOM05D000526 ORTHO05D002053 5.4e-06 57.8 130 30.8
Lalb_Chr09g0324671 Lupinus albus HOM05D000526 ORTHO05D002053 5.4e-06 57.8 147 30.6
SGA_v2.0_scaffold221G42677 Striga asiatica HOM05D000526 ORTHO05D002053 5.4e-06 57.8 130 30.8
Gohir.D07G013300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 7.0e-06 57.4 177 27.7
PSO063G1980 Papaver somniferum HOM05D000526 ORTHO05D002053 7.0e-06 57.4 130 30.8
PSO339G0287 Papaver somniferum HOM05D000526 ORTHO05D002053 7.0e-06 57.4 130 30.8
Gohir.A02G161200 Gossypium hirsutum HOM05D000453 ORTHO05D000387 9.2e-06 57.0 111 34.2
Gohir.D03G019300 Gossypium hirsutum HOM05D000453 ORTHO05D000387 9.2e-06 57.0 111 34.2


User provided reference genes

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