Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.1e-133 479.9 248 100.0
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 2.8e-132 475.3 248 99.6
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 6.3e-132 474.2 248 99.2
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 1.2e-119 433.3 248 92.7
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.0e-114 416.0 257 84.4
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 2.6e-114 415.6 257 84.0
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.0e-113 411.4 252 84.5
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.0e-110 402.1 251 83.3
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 8.8e-110 400.6 251 83.3
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 2.5e-104 382.5 199 98.5
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.8e-102 376.3 231 87.9
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 3.5e-90 335.5 217 75.1
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 8.9e-86 320.9 258 64.3
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 3.4e-85 318.9 230 70.4
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 4.4e-85 318.5 213 72.8
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 4.9e-84 315.1 253 64.0
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 8.3e-84 314.3 239 65.7
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 3.2e-83 312.4 254 64.2
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 5.4e-83 311.6 166 96.4
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 3.5e-82 308.9 199 76.9
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 4.6e-82 308.5 248 64.9
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 6.0e-82 308.1 251 64.9
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 1.7e-81 306.6 220 70.9
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 6.6e-81 304.7 259 63.7
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 9.5e-80 300.8 259 61.4
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 9.5e-80 300.8 236 65.7
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 2.1e-79 299.7 254 61.0
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 2.8e-79 299.3 232 65.5
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 2.8e-79 299.3 246 62.6
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 3.6e-79 298.9 244 62.7
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 4.0e-78 295.4 228 65.8
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 5.2e-78 295.0 222 67.1
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 5.2e-78 295.0 233 64.4
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 1.2e-77 293.9 233 67.8
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.2e-77 293.9 216 67.6
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 1.5e-77 293.5 253 61.3
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 2.6e-77 292.7 208 68.8
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 2.6e-77 292.7 219 64.4
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 2.6e-77 292.7 245 61.2
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 3.4e-77 292.4 215 65.1
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 3.4e-77 292.4 216 67.1
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 4.4e-77 292.0 242 65.3
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 5.8e-77 291.6 259 58.3
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 9.8e-77 290.8 250 62.4
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 4.9e-76 288.5 212 69.8
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 8.3e-76 287.7 222 66.7
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 1.1e-75 287.3 219 65.3
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 1.1e-75 287.3 242 60.3
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 1.9e-75 286.6 211 70.1
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 1.9e-75 286.6 222 64.9
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 2.4e-75 286.2 210 65.2
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 2.4e-75 286.2 210 65.2
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 2.4e-75 286.2 252 61.1
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 3.2e-75 285.8 221 66.1
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 5.4e-75 285.0 210 64.8
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 7.0e-75 284.6 212 69.3
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 7.0e-75 284.6 212 68.9
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.2e-74 283.9 219 63.0
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 1.2e-74 283.9 241 64.7
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 1.6e-74 283.5 255 60.0
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 2.1e-74 283.1 254 57.9
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 2.7e-74 282.7 250 59.2
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 3.5e-74 282.3 214 65.0
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 4.6e-74 282.0 241 63.1
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 1.0e-73 280.8 219 63.0
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.3e-73 280.4 245 57.1
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 3.0e-73 279.3 224 62.5
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 3.9e-73 278.9 248 59.7
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 5.1e-73 278.5 250 60.0
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 1.1e-72 277.3 205 68.8
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 2.5e-72 276.2 215 66.5
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 3.3e-72 275.8 256 57.0
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 4.3e-72 275.4 242 59.1
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 7.3e-72 274.6 213 64.3
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 9.5e-72 274.2 250 56.8
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 3.6e-71 272.3 234 58.1
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 6.2e-71 271.6 225 61.8
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 6.2e-71 271.6 216 61.6
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.1e-70 270.8 251 58.2
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 1.1e-70 270.8 214 65.0
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 3.1e-70 269.2 199 65.3
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 3.1e-70 269.2 216 61.1
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 4.0e-70 268.9 236 60.6
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 8.9e-70 267.7 243 57.6
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 8.9e-70 267.7 246 57.7
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 1.2e-69 267.3 223 61.9
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 2.6e-69 266.2 217 60.4
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 5.8e-69 265.0 220 60.9
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 1.3e-68 263.8 253 55.7
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 1.3e-68 263.8 228 61.0
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 8.3e-68 261.2 215 60.9
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 8.3e-68 261.2 215 60.9
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 8.3e-68 261.2 218 60.1
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.1e-67 260.8 251 55.4
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.9e-67 260.0 215 60.9
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 1.9e-67 260.0 199 66.8
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 1.9e-67 260.0 215 63.7
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.4e-67 259.6 215 60.9
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 3.2e-67 259.2 229 57.2
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 4.1e-67 258.8 247 56.7
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 7.1e-67 258.1 200 67.5
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 7.1e-67 258.1 230 58.7
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 3.0e-65 252.7 170 73.5
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 2.5e-64 249.6 161 73.3
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 4.3e-64 248.8 211 60.2
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.2e-61 240.7 199 61.8
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 4.2e-59 232.3 245 51.8
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 4.2e-59 232.3 210 55.7
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 2.1e-58 229.9 158 68.4
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 4.6e-58 228.8 228 56.1
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 6.0e-58 228.4 252 51.2
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 1.0e-57 227.6 260 50.0
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 1.3e-57 227.3 239 50.6
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 5.1e-57 225.3 264 48.1
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 4.3e-56 222.2 196 60.2
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 7.3e-56 221.5 164 69.5
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 8.1e-55 218.0 215 53.0
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.4e-46 189.9 183 56.3
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 7.6e-45 184.9 176 53.4
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 2.3e-41 173.3 169 53.8
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 5.1e-41 172.2 115 70.4
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 3.4e-37 159.5 253 40.3
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 1.3e-36 157.5 163 47.2
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.6e-34 150.6 136 55.9
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 7.4e-32 141.7 185 46.5
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 2.0e-29 133.7 89 70.8
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 4.5e-29 132.5 121 57.9
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 7.6e-29 131.7 99 65.7
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 3.2e-27 126.3 127 52.8
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 6.7e-25 118.6 194 36.6
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 1.1e-24 117.9 154 46.8
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 2.9e-20 103.2 133 45.1
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 2.9e-12 76.6 85 51.8
Cc02_g24380 Coffea canephora HOM05D005088 ORTHO05D006914 1.1e-11 74.7 56 64.3
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 1.2e-10 71.2 194 31.4
Sopen01g009540 Solanum pennellii HOM05D000030 ORTHO05D000009 1.4e-09 67.8 50 70.0
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 2.3e-09 67.0 93 43.0
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 6.7e-09 65.5 167 31.7
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 1.5e-08 64.3 217 30.4
C09p52510 Brassica napus HOM05D005088 ORTHO05D017652 9.1e-06 55.1 62 45.2
BolC9t58117H Brassica oleracea HOM05D005088 ORTHO05D017652 9.1e-06 55.1 62 45.2


User provided reference genes

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